Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g14
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25500.1 68418.m03034 expressed protein ; expression supporte...    30   1.4  
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (...    29   2.4  
At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138...    28   7.4  
At1g23960.1 68414.m03025 expressed protein contains Pfam profile...    28   7.4  
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide...    27   9.8  

>At5g25500.1 68418.m03034 expressed protein ; expression supported
           by MPSS
          Length = 420

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 724 SLTQVCTITTESVQSQGVVRGTGCIHICHYR 632
           SLT+VC     S Q + +VR T C  +  YR
Sbjct: 135 SLTKVCNFLNVSAQQRKLVRSTVCSQVTQYR 165


>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (Atm)
            identical to ataxia-telangiectasia mutated protein (Atm)
            [Arabidopsis thaliana] GI:7529272; contains Pfam profile
            PF00855: PWWP domain; contains GA donor splice site at
            exon 73
          Length = 3255

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +2

Query: 128  KMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQR 307
            K+P +  E ++  +TRI E  ++ GV++ +K + Q+ T               L A  Q+
Sbjct: 2768 KLP-DHVEILVSAITRINEPDSLYGVIHSNKLSAQIITFEHEGNWTRALEYYDLQARSQK 2826

Query: 308  AVTEIDIEDTLVAYRIETKTS 370
             V    + + L   + +  TS
Sbjct: 2827 MVVPSSLSENLEVEQFQPTTS 2847


>At3g03810.1 68416.m00391 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;  previously annotated as
           'auxin-independent growth promoter protein -related'
           based on similarity to axi 1 protein (GB:X80301)
           (GI:559920) from [Nicotiana tabacum], which, due to
           scienitific fraud was retracted. Retraction in: Schell
           J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.
          Length = 656

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 203 VLYLSKDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEIDIEDTL 340
           + +L  D + M TLPE++     RN  PL      A  +  +ED L
Sbjct: 153 IAFLKNDVIVMKTLPESLKAARKRNEFPLFKPKNSASPKFYLEDVL 198


>At1g23960.1 68414.m03025 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 302

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = -1

Query: 348 YATNVSSISISVTARCILALSGGRFLHRTCATVSGNVYIWTASFDRYRTP 199
           + TN     +S+    I    G   L+      S NVYIW    ++ R P
Sbjct: 210 FITNTDLSRLSIEKVAIETSIGDALLYERLEAKSANVYIWFKRLEKPRVP 259


>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
           identical to phytochrome A supressor spa1 (GI:4809171)
           [Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
           PF00400) (1 weak)
          Length = 1029

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 65  EIFQHFLLSMSIQYKKKINKCKMPKEFKEQVIKTVTR 175
           E+  HFL S+ +Q KKK +K     +  E  IK   R
Sbjct: 546 ELLLHFLSSLEVQKKKKASKLLQDIQTLEDDIKEAER 582


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,432
Number of Sequences: 28952
Number of extensions: 288538
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)