Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g12
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    28   1.2  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    28   1.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.8  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    26   5.0  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.7  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   8.7  

>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 171 CSQGPDFILFLSHQIVRISRHDIVIIVLWHE 79
           CS     I F+SH+  R+S+  + I+++W E
Sbjct: 544 CSLNFGKISFISHEFYRVSKRFLDILLIWFE 574


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 76  QFMPEDYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGD-WQTE 252
           +F  ++Y+Y  V      L  + E+ VR LR    +CA+  Q   +++V+ ++ + W+  
Sbjct: 78  RFSLKNYHYYEVAATCIFLATKVEDSVRKLRDIVINCAKVAQKNSNVLVDEQTKEYWRWR 137

Query: 253 DVSL 264
           DV L
Sbjct: 138 DVIL 141


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -1

Query: 395  SSISFSAMILSFISGILDMASFILNTPCAVMSPSFISTQRAHFLRDTSSVCQSPLFKLTT 216
            S  SF ++   F+S ++  A +IL+ P      SFI     HF + T++           
Sbjct: 1975 SIFSFFSLFWWFLSRVVQ-ARYILSLPFFFFGISFILVAITHFFQKTTACSVIQHIAAYV 2033

Query: 215  KSGLTWTSSAQSAWN 171
             +  + T S   AWN
Sbjct: 2034 YAISSSTGSLYFAWN 2048


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +1

Query: 262 LKKWALCVLMKLGLMTAQGVFKMNEAMSKIPDMNDKI 372
           +K+W LCV++       Q +F +   M  + D++ ++
Sbjct: 561 MKEWFLCVIVDNDFQNGQSLFDVFNKMRSLKDIHPEL 597


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 375 SRETYRRLPQSPGNNA 422
           SR TYR+LP  P N+A
Sbjct: 97  SRTTYRQLPNEPQNSA 112


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 372 HSRETYRRLPQSPGNNATRRRMELH*MSSSERSRGKF 482
           H+ E  + L QSP    TRR  +L   SS + S+  F
Sbjct: 617 HASENDKSLKQSPFQKLTRRLSDLSVNSSGQISKQDF 653


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = -1

Query: 422 GVVAWRLRQSSISFSAMILSFISGILDMASFILNTPCAVMSPSFISTQRAHFLRDTSSVC 243
           GV  W    +++S+     +F+  I      IL+T  +  S S  S   +  L  TSS+ 
Sbjct: 294 GVTIWDTSLAAMSYDNSSETFVEAIHK----ILDTK-SKHSSSKSSHDSSQGLESTSSIA 348

Query: 242 QSPLFKLTTKSGLTWTSSAQS 180
            +P   +++ S  + TSSA S
Sbjct: 349 LNPTSSISSTSSSSSTSSAIS 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,504
Number of Sequences: 5004
Number of extensions: 61117
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)