Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g12
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_57902| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_56059| Best HMM Match : Zw10 (HMM E-Value=0.37)                     29   5.3  
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)                        29   5.3  
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)              28   7.0  

>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 126 VRISRHDIVIIVLWHELPTAQKTVIQ*YYEGTHFFRRSH 10
           +  +R+  +IIV+  E+P    T+I  ++   H+F R H
Sbjct: 550 ITCTRYGTIIIVITTEMPIVTTTIIHYHHCQHHYFHRFH 588


>SB_57902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 430

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 265 KKWALCV-LMKLGLMTAQGVFKMNEAMSKIPDMNDKIIAEKLIDDC 399
           K W L + L+K+ ++TAQ VF  ++   KIP   D   A+ ++DDC
Sbjct: 116 KPWKLLIQLIKIIIVTAQIVFDNSKHDGKIPVTLD---ADGIMDDC 158


>SB_56059| Best HMM Match : Zw10 (HMM E-Value=0.37)
          Length = 396

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +1

Query: 82  MPEDYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGDWQTEDVS 261
           +PED YY  +    D +++E  NEV  L    +D A  +    ++V+N     +     +
Sbjct: 272 LPEDLYYHSLGALLDAVIQEITNEVLKLEDLSSDEAHQLNFLLNVVINKAPELFPDPSTA 331

Query: 262 LKKWA 276
           +  W+
Sbjct: 332 IPHWS 336


>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
          Length = 1650

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 139  EKENEVRALRAFQADCAEDVQVKPDLV 219
            E ENE RALR+F+ D   D Q  P ++
Sbjct: 986  EAENEDRALRSFKMDVKVDRQYHPKII 1012


>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
          Length = 1452

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +1

Query: 139 EKENEVRALRAFQADCAEDVQVKPDLVVNLKSGDWQTEDVSLKKW 273
           +K+N   A  AF+AD  E+VQ K D V   K G  + +    K W
Sbjct: 458 DKQNRTSAFLAFEADNLEEVQGKHDTVPE-KFGRSKAQLELFKMW 501


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,191,658
Number of Sequences: 59808
Number of extensions: 453017
Number of successful extensions: 1137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)