Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g12
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g47740.2 68414.m05309 expressed protein                             32   0.46 
At1g47740.1 68414.m05308 expressed protein                             32   0.46 
At2g16030.1 68415.m01838 expressed protein                             31   1.1  
At1g56660.1 68414.m06516 expressed protein                             29   2.5  
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea...    29   2.5  
At5g03330.2 68418.m00285 OTU-like cysteine protease family prote...    29   4.3  
At5g03330.1 68418.m00284 OTU-like cysteine protease family prote...    29   4.3  
At3g06100.1 68416.m00700 major intrinsic family protein / MIP fa...    28   7.6  
At2g47350.2 68415.m05910 PAPA-1-like family protein / zinc finge...    27   10.0 
At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finge...    27   10.0 
At1g15870.1 68414.m01904 mitochondrial glycoprotein family prote...    27   10.0 

>At1g47740.2 68414.m05309 expressed protein
          Length = 279

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 70  CGQFMPEDYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVK 207
           C   +PE      V  DPD  + E+ENE R+LR+    C   + ++
Sbjct: 198 CSCILPESLKITAVCHDPDGQIPEEENEKRSLRS-SFSCLSSISMR 242


>At1g47740.1 68414.m05308 expressed protein
          Length = 279

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 70  CGQFMPEDYYYDIVTRDPDDLMREKENEVRALRAFQADCAEDVQVK 207
           C   +PE      V  DPD  + E+ENE R+LR+    C   + ++
Sbjct: 198 CSCILPESLKITAVCHDPDGQIPEEENEKRSLRS-SFSCLSSISMR 242


>At2g16030.1 68415.m01838 expressed protein
          Length = 231

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -1

Query: 362 FIS-GILDMASFILNTPCAVMSPSFISTQRAHFLRDTSSVCQSPLFKLTTKSGLTWTSSA 186
           F+S G + M   IL TP   +SP   S    HF R T          L  K+   W+S A
Sbjct: 16  FLSIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQHLPLPKKNARIWSSGA 75


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 118 DPDDLMREKENEVRALRAFQADCAEDVQVKPDLVVNLKSGDWQTEDVSLK 267
           + D  M+EK+++    +     CAE+ + KPD     K    + ED  LK
Sbjct: 237 ETDQEMKEKDSKKNKKKEKDESCAEEKKKKPDKEKKEKDESTEKEDKKLK 286


>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
           family protein Strong similarity to gb AF096285
           serine-threonine kinase receptor-associated protein from
           Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
           domains. EST gb|F14050 comes from this gene
          Length = 333

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -3

Query: 432 GVVWRCCLETEAIVDKFLCYDFIIHIWNLRHG-FVH-FEH 319
           G VW C L+  AI       DF   IWN   G  +H FEH
Sbjct: 57  GAVWSCSLDKNAIRAASASADFTAKIWNALTGDELHSFEH 96


>At5g03330.2 68418.m00285 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 356

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 361 NDKIIAEKLIDDCLSLQATTPHD-AAWNYIKCHHQKDPEGNFSSLN 495
           ND+IIA  L DD L L+    +D +  N  + H Q+    N+S+ N
Sbjct: 64  NDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNN 109


>At5g03330.1 68418.m00284 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 356

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 361 NDKIIAEKLIDDCLSLQATTPHD-AAWNYIKCHHQKDPEGNFSSLN 495
           ND+IIA  L DD L L+    +D +  N  + H Q+    N+S+ N
Sbjct: 64  NDEIIARTLQDDFLQLEIAESNDYSHQNQQQQHQQEGYTNNYSNNN 109


>At3g06100.1 68416.m00700 major intrinsic family protein / MIP
           family protein contains Pfam profile: PF00230 major
           intrinsic protein; contains non-consensus TT acceptor
           splice site at exon 4
          Length = 275

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 419 VVAWRLRQSSISFSAMILSFISGILDMASFILNT-PC-AVMSPSFISTQR 276
           VVAW      I  +A ++  I G+L   S  L T PC + +SPS  S  R
Sbjct: 226 VVAWDFEDLWIYMTAPVIGAIIGVLTYRSISLKTRPCPSPVSPSVSSLLR 275


>At2g47350.2 68415.m05910 PAPA-1-like family protein / zinc finger
           (HIT type) family protein contains Pfam domains,
           PF04795: PAPA-1-like conserved region and PF04438: HIT
           zinc finger
          Length = 374

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 272 HFLRDTSSVCQSPLFKLTTKSGLTW 198
           H L+++S  C SPL K     G+TW
Sbjct: 167 HDLQESSEDCNSPLDKKADLEGVTW 191


>At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finger
           (HIT type) family protein contains Pfam domains,
           PF04795: PAPA-1-like conserved region and PF04438: HIT
           zinc finger
          Length = 486

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 272 HFLRDTSSVCQSPLFKLTTKSGLTW 198
           H L+++S  C SPL K     G+TW
Sbjct: 167 HDLQESSEDCNSPLDKKADLEGVTW 191


>At1g15870.1 68414.m01904 mitochondrial glycoprotein family protein
           / MAM33 family protein similar to SUAPRGA1 [Emericella
           nidulans] GI:6562379; contains Pfam profile PF02330:
           Mitochondrial glycoprotein
          Length = 242

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 190 EDVQVKPDLVVNLKSGDWQTEDVSLKKW 273
           EDVQ+    +VN+  GD +T ++    W
Sbjct: 134 EDVQLHITFIVNISKGDGETLEIMCSAW 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,116
Number of Sequences: 28952
Number of extensions: 314587
Number of successful extensions: 721
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)