Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10g08
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07810.1 68418.m00895 SNF2 domain-containing protein / helica... 32 0.38
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 31 0.51
At2g13960.1 68415.m01551 myb family transcription factor contain... 31 0.67
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 30 1.2
At2g40950.1 68415.m05056 bZIP transcription factor family protei... 30 1.2
At3g10440.1 68416.m01252 hypothetical protein 30 1.5
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 29 2.0
At5g15990.1 68418.m01869 hypothetical protein very low similarit... 29 3.6
At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas... 29 3.6
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c... 28 4.7
At3g52690.1 68416.m05804 hypothetical protein predicted proteins... 28 6.2
At4g23530.1 68417.m03391 expressed protein 27 8.2
At2g36740.1 68415.m04507 YL1 nuclear family protein similar to Y... 27 8.2
>At5g07810.1 68418.m00895 SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein similar to HepA-related
protein HARP [Homo sapiens] GI:6693791; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF01844: HNH
endonuclease
Length = 1190
Score = 31.9 bits (69), Expect = 0.38
Identities = 26/97 (26%), Positives = 48/97 (49%)
Frame = +2
Query: 293 LPRWWQAKVIQYAFAHPHVRARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRIS 472
LPRW + VI Y H+R + + + L+ D+++ +R +++ I
Sbjct: 290 LPRWPKVVVISYKMLQ-HLRTTMLEREWALLI--VDESH------HLRCSKKKSDPPEIK 340
Query: 473 SRVLDEMERLKRLILVGKTPLKECPPELFHHPVFVFW 583
+ VLD E++K +IL+ TP P ++FH + + W
Sbjct: 341 T-VLDVAEKVKHIILLSGTPSVSRPFDIFHQ-INMLW 375
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 347 VRARLEKHMGSNLVRLTDKNYMTELEERIRAVNEENLNKRISSRVLDEMERLKRL 511
+RA EKH+ + K + ELE+++ + E SR+ +E LKRL
Sbjct: 462 LRALQEKHVNAREASAKLKTRIAELEDQLSDLTAERYENERDSRLTQAVESLKRL 516
>At2g13960.1 68415.m01551 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 150
Score = 31.1 bits (67), Expect = 0.67
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +3
Query: 336 PTRTSVRGWRSTWDQTWCGSRTRTT*PNWKKELELSTKKI*TKESLAECLMRWKD*KD*S 515
P R + GW D+T + + WKK E ++ + +CL RW+ +
Sbjct: 70 PMRRAKGGWTPEEDETLRRAVEKYKGKRWKKIAEFFPER-----TQVQCLHRWQKVLNPE 124
Query: 516 LLEKPR*RSVLLNFSTTQ 569
L++ P + VLL+FS ++
Sbjct: 125 LVKGPWTQEVLLSFSCSE 142
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = -1
Query: 529 GFSNKDQSF--QSFHLI---KHSARDSFVQIFFVDSSNSFFQFGH 410
G KD+S+ S H I ++ R S +++F VD SN FF FG+
Sbjct: 2149 GDQEKDRSWPMSSLHQIYSRRYLLRRSALELFMVDRSNFFFDFGN 2193
>At2g40950.1 68415.m05056 bZIP transcription factor family protein
similar to AtbZIP transcription factor GI:17065880 from
[Arabidopsis thaliana]; contains Pfam profile: bZIP
transcription factor PF00170
Length = 721
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 350 RARLEKHMGS-NLVRLTDKNYMTELEERIRAVNE--ENLNKRISSRVLDEMERLKRLILV 520
RARL ++ S L R K+Y+ ELEE++R ++ +LN +IS + + ++L
Sbjct: 232 RARLMRNRESAQLSRQRKKHYVEELEEKVRNMHSTITDLNGKISYFMAENATLRQQLGGN 291
Query: 521 GKTPLKECPPELFHHP 568
G P PP + +P
Sbjct: 292 GMCPPHLPPPPMGMYP 307
>At3g10440.1 68416.m01252 hypothetical protein
Length = 556
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 310 GKSDTICLCPPARPCAAGEAHGIKPGAAHGQELHDRIGRKN*SCQRR 450
G D + AR CA+ ++ G KP A ++ +RIG+ S +R+
Sbjct: 425 GPHDDQTIAANARCCASEQSIGSKPEAVEPHDIEERIGKIRVSSRRQ 471
>At1g79560.1 68414.m09275 FtsH protease, putative contains similarity
to chloroplast FtsH protease GI:5804782 from [Nicotiana
tabacum]
Length = 1008
Score = 29.5 bits (63), Expect = 2.0
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +2
Query: 269 MKRFQLPNLPRWWQAKVIQYAFAHPHVRARLEKHMGSNLVRLTDKNYMTELEERIRAVNE 448
+K+ + +LP ++I+Y + HPHV S L Y+ E EE A+N
Sbjct: 875 VKKIGMVDLPDNPDGELIKYRWDHPHVMPAEMSVEVSELFTRELTRYIEETEE--LAMNA 932
Query: 449 ENLNKRISSRVLDEMERLKRLI-LVGKTPLKECPPELF 559
N+ I + E+ R+ L + +K+ P +F
Sbjct: 933 LRANRHILDLITRELLEKSRITGLEVEEKMKDLSPLMF 970
>At5g15990.1 68418.m01869 hypothetical protein very low similarity
to tropomyosin [Crassostrea gigas] GI:15419048
Length = 115
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 440 VNEENLNKRISSRVLDEMERLKRLILVGKTPLKECPPELFHHPVFVFWRM 589
+++ ++ K + +LDE+ERL R V + + E H VF RM
Sbjct: 21 IDDNHIFKWVDEALLDEIERLARRTTVLEETISHITTESTDHKKMVFERM 70
>At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase
family protein similar to NAD+ dependent isocitrate
dehydrogenase subunit 2 [Arabidopsis thaliana]
GI:1766048; contains Pfam profile PF00180 dehydrogenase,
isocitrate/isopropylmalate family
Length = 294
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 209 VKIQVEGEDETGEGEMSRKKMKRFQLPNLPRWWQAKVIQYAFAHPHVRARLE---KHMGS 379
++ EGE E E+ ++ FQ+ + ++W ++ +YAF + H R + H
Sbjct: 100 IRENTEGEYAGREHEVVPGVIESFQV-TMTKFWSDRIAKYAFEYAHFSKRKKVTAVHNNG 158
Query: 380 NLVRLTDKNYMTELEE 427
+L D ++ +E
Sbjct: 159 KYEKLADAFFLESCQE 174
>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
contains Pfam PF02138: Beige/BEACH domain; similar to LBA
isoform gamma (GI:10257405) [Mus musculus]; similar to
beige-like protein (CDC4L) - Homo sapiens; similar to
Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
protein homolog implicated in neuronal membrane traffic
(AKAP550) (GI:11863541) [Drosophila melanogaster].
Length = 1928
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -1
Query: 523 SNKDQSFQSFHLIKHSARDSFVQIFFVDSSNSFFQFGH 410
S+ Q + +L+K SA +++F VD SN FF FG+
Sbjct: 1595 SSLHQIYSRRYLLKKSA----LELFMVDRSNFFFDFGN 1628
>At3g52690.1 68416.m05804 hypothetical protein predicted proteins,
Arabidopsis thaliana
Length = 299
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 203 CPYHPDLFCFQFYPPFLLSNLII 135
CP DLF +Q+YP ++ N II
Sbjct: 50 CPNLEDLFMYQYYPLDVVMNFII 72
>At4g23530.1 68417.m03391 expressed protein
Length = 396
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 410 MTELEERIRAVNEENLNKRISSRVLDEMERLKRLILVGKTPLKECPPELFHHPV 571
+ E ER R +E ++ +V DEME + R + VG L+ ++FH V
Sbjct: 328 LMEFAERFRFPADEEEEVEVAEKV-DEMEEICRRMEVGLEDLQRQVRQVFHRLV 380
>At2g36740.1 68415.m04507 YL1 nuclear family protein similar to YL-1
protein (Transcription factor-like 1)
(Swiss-Prot:Q15906) [Homo sapiens]
Length = 379
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 389 RLTDKNYMTELEERIRAVNEENLNKRISSRVLDEMERLKRLILVGKTPLKECPPELFHH 565
++ ++ MT+ E + A E +N R RVL E +K+ +V K K P++ +H
Sbjct: 196 KVGEEKRMTQEEMLLEAAQTEIMNLRNLERVLAREEEVKKKAIVHKAVYK--GPQIRYH 252
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,592
Number of Sequences: 28952
Number of extensions: 256452
Number of successful extensions: 763
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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