Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10g05
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.5
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 3.4
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 3.4
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 26 4.4
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 4.4
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 5.9
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 26 5.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 5.9
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 7.8
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 25 7.8
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +3
Query: 321 EYHCHTCNTKCDLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA 500
EY H LN T +D SR +KN E + + +QE+ L+ ++E +++
Sbjct: 1297 EYKRHNQEILLSLNSSTSTSSDASR----LKNELVSKENLIEELNQEIGHLKSELETVKS 1352
Query: 501 LANTVETK 524
+ +E +
Sbjct: 1353 KSEDLENE 1360
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 565 QREFKRILYLIQEILVKWPNRIFSSQ 642
Q+ ++ +YL +L+K+PNR+ S+
Sbjct: 230 QKNYEESIYLYARLLIKFPNRLDYSE 255
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 3.4
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Frame = +3
Query: 243 KPWSFLSGFYSFMIMCCLLSVIYLMLEYHCHT-CNTKCDLNGITRNINDISRNLSLMKNN 419
+ W + FY+ I+ + IYL L+Y C + L+ + + N ++ L KN
Sbjct: 209 RDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKNA 268
Query: 420 YEDLEIKLSKFSQELPKLEGQM-EILEALANTVETKDFGWNPNSPLLLN 563
+D + L ++ L G+ E + L T KD WN + L++
Sbjct: 269 IQDYLVSLK--ITDIRMLGGKFGEEIINLLGTDSIKDV-WNMSMDFLID 314
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 357 LNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQ 458
++ I N+I L MK +E E KLS+FS+
Sbjct: 115 IDQILGQTNNIESTLLSMKEKFESSEKKLSEFSE 148
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = -2
Query: 606 NFLNQIQNAFEFSLHSEVKENSDSIQNPLFPQCS 505
+++N++ FS+++ KEN D++ N +F CS
Sbjct: 168 SYINELLLELSFSIYT--KENEDALFNNVFRPCS 199
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 366 ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLE 476
++ I D S+ L+KN E+ LS S +LP E
Sbjct: 598 VSATIKDESKTFELLKNIQRKYELILSGSSVDLPSAE 634
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 576 EFSLHSEVKENSDSIQNPLFP 514
E +HS V E +D+I+NP P
Sbjct: 384 ELEVHSTVPEPNDAIENPEIP 404
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +3
Query: 366 ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALANTVET 521
I IND+ +++ + EDLE S F++++ + + + LE + +E+
Sbjct: 280 INTTINDLKSQMTITDESSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLES 331
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = -2
Query: 591 IQNAFEFSLHSEVKENSDSIQNPLFPQCSPGLQVFPFV 478
++N +L +++E +DS+ +P F + SP + ++
Sbjct: 148 LRNYHYLNLDQDIQEENDSLISPFFFRISPNESAYDYL 185
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 447 KFSQELPKLEGQMEILEALANTVETKDFGWNPNSPLLLN 563
KFSQ+ KLE + +L L++ +++ P LLLN
Sbjct: 55 KFSQQTFKLENEYFLLRQLSSHPNGRNYAIAPAYILLLN 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,532
Number of Sequences: 5004
Number of extensions: 55523
Number of successful extensions: 192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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