Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g05
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        32   0.38 
SB_44341| Best HMM Match : Paramecium_SA (HMM E-Value=1.5)             32   0.50 
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_45297| Best HMM Match : SlyX (HMM E-Value=9.3)                      30   1.5  
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 29   2.7  
SB_2494| Best HMM Match : M (HMM E-Value=0.0056)                       29   3.5  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     29   4.7  
SB_55003| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-35)                 28   6.2  
SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_32483| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8)                    28   8.1  
SB_2350| Best HMM Match : DUF883 (HMM E-Value=9.1)                     28   8.1  

>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 357 LNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA 500
           +N   R    ++ N++ MK+  E LE  L +  Q   KLE + E LEA
Sbjct: 802 VNSSERENRALAENIASMKSEKESLETALYELQQTSTKLESRKEALEA 849


>SB_44341| Best HMM Match : Paramecium_SA (HMM E-Value=1.5)
          Length = 257

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = +3

Query: 141 IWKKRTMDRARRNRRGRYQSQNNSTADQYNTRTTKP--WSFLSGFYSFMIMCCLLSVIYL 314
           I+  R M    +      ++QN   A ++  +T K   W +L  F SF     +    + 
Sbjct: 150 IYNTRAMHFKHKRNACPRKAQNKRNAHKHRAQTLKKKVWPYLYPFLSFF---AITYTQFA 206

Query: 315 MLEYHCHTCNTKCDLNGITRNIND 386
            + + C  C  K  + G+TR+I D
Sbjct: 207 SIWFLCSLCAQKYPVPGMTRSIQD 230


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +3

Query: 339  CNTKC-DLNGITRNINDIS---RNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALA 506
            CN +  DL+ +  ++  +    + L+   N +EDLE + S+ S++LP +E Q E+ + L+
Sbjct: 5289 CNEEFKDLDALKNDLESVELLEKKLAETNNQFEDLEERSSEISEKLP-VEAQTELRKRLS 5347

Query: 507  N 509
            +
Sbjct: 5348 D 5348


>SB_45297| Best HMM Match : SlyX (HMM E-Value=9.3)
          Length = 104

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
 Frame = +3

Query: 366 ITRNINDISRNLSLMKNNYEDLEI------KLSKFSQELPKLEGQMEILEALANTVETKD 527
           I R  N++ +N S  K++ E+LEI      ++ ++ QE+   + QM  LE L + V+ + 
Sbjct: 35  IGRLENELRKNDSYFKDSSENLEIIERQRERIVQYQQEIEDTKVQMARLEELVHRVQEQS 94

Query: 528 FGWNPNSP 551
              + N+P
Sbjct: 95  IKEHVNTP 102


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 408 MKNNYEDLEIKLSKFSQELPKLEGQMEILEALA---NTVETKDFGWNPNSP 551
           ++   +D E +  K  Q++ +LE Q E +EA+    +  ET+     PN+P
Sbjct: 186 LETKLQDAEERAEKAEQKVQELEAQAEAMEAVLAFPSPAETEPLNSTPNTP 236


>SB_2494| Best HMM Match : M (HMM E-Value=0.0056)
          Length = 737

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 372 RNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQME 488
           R ++++S  L    +N  DL+ +LS    ++ KLEGQ E
Sbjct: 315 RKVSELSSLLQKADDNNNDLDQELSALKGQMWKLEGQAE 353


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 294  LLSVIYLMLEYHCHTCNTKCDLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKL 473
            LL    LM  Y     N +C LNG   N +  +      +    DL++ LSK++Q  P +
Sbjct: 3760 LLLTHALMHPYGSAPFNGQCTLNGTFGNASIENTADYYSRFPSPDLDVVLSKYAQRKPLV 3819

Query: 474  EGQMEI 491
             G + +
Sbjct: 3820 NGDVTV 3825


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 372 RNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA 500
           + + D ++NL L K  YE ++ + +   QEL  L+ + + L++
Sbjct: 406 KQLKDATKNLELEKKKYEKVKEQFTTTEQELKDLKKEHDALQS 448


>SB_55003| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-35)
          Length = 303

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 171 RRNRRGRYQSQNNSTADQYNTRTTKPWSFLSGFYSFMI---MCCLLSVIY 311
           + ++ G YQ    +   + N +TTK  + L   YS  I   M C+L VI+
Sbjct: 168 KNSQHGLYQKSTMAARTRQNKKTTKVLTGLVTIYSICILPHMICVLMVIF 217


>SB_41021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +3

Query: 414 NNYEDLEIKLSKFSQELPKLEGQMEILEALANTVETKDFGWNPNSPLLLNAER 572
           + Y+D+E +     Q L  +  Q EIL    N  ++KDFG N +SP+L    R
Sbjct: 239 HKYKDIEFETRNKWQCLRHVRIQ-EILTRTTNN-QSKDFGNNTSSPMLAELPR 289


>SB_32483| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +3

Query: 342 NTKCDLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALANTVET 521
           N K          NDI  ++ L++    D + +LS+ +  LPK       L++    V T
Sbjct: 2   NEKHHSTDYAERFNDIQNDIRLLRETISDFQDRLSEGNIVLPKTRSFSLFLKSFITEVNT 61

Query: 522 K 524
           +
Sbjct: 62  R 62


>SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8)
          Length = 504

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 147 KKRTMDRARRNRRGRYQSQNNSTADQYNTRTTKPWSFLSGFYS 275
           ++RT D   R R  R+Q  N    D++  R T+ W+ L    S
Sbjct: 283 QRRTYDEQTRTRSARFQ-LNPLDTDKFYERETRRWALLDEIMS 324


>SB_2350| Best HMM Match : DUF883 (HMM E-Value=9.1)
          Length = 405

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 147 KKRTMDRARRNRRGRYQSQNNSTADQYNTRTTKPWSFLSGFYS 275
           ++RT D   R R  R+Q  N    D++  R T+ W+ L    S
Sbjct: 292 QRRTYDEQTRTRSARFQ-LNPLDTDKFYERETRRWALLDEIMS 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,578,308
Number of Sequences: 59808
Number of extensions: 380135
Number of successful extensions: 1160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)