Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g05
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47250.3 68416.m05132 expressed protein contains Pfam profile...    30   1.3  
At3g47250.2 68416.m05131 expressed protein contains Pfam profile...    30   1.3  
At3g47250.1 68416.m05130 expressed protein contains Pfam profile...    30   1.3  
At5g63560.1 68418.m07977 transferase family protein similar to h...    29   2.2  
At3g15600.1 68416.m01976 hypothetical protein low similarity to ...    29   2.2  
At5g23810.1 68418.m02795 amino acid transporter family protein s...    28   5.0  
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,...    28   5.0  
At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar...    28   5.0  
At3g54060.1 68416.m05977 hypothetical protein mucin MUC3, Homo s...    28   6.7  
At3g10630.1 68416.m01278 glycosyl transferase family 1 protein c...    28   6.7  
At3g52090.1 68416.m05716 DNA-directed RNA polymerase II 13.6 kDa...    27   8.8  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    27   8.8  
At1g59890.1 68414.m06747 paired amphipathic helix repeat-contain...    27   8.8  
At1g49950.3 68414.m05604 DNA-binding protein, putative contains ...    27   8.8  
At1g49950.2 68414.m05603 DNA-binding protein, putative contains ...    27   8.8  
At1g49950.1 68414.m05602 DNA-binding protein, putative contains ...    27   8.8  

>At3g47250.3 68416.m05132 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
 Frame = +3

Query: 114 NELLK*LNTIWKKRTMDRARRNRRGRYQSQNNSTADQYN--------TRTTKPWSFLSGF 269
           NE+ +   TI K    D  R   R  ++  N  T+  YN        T    PW+ LS F
Sbjct: 396 NEVSQFFKTICKDVVFDTRRSYLRNVFEGVNEYTSKTYNGVWAGFRHTHFESPWTALSSF 455

Query: 270 -YSFMIMCCLLSVIYLMLEYHCHT 338
              F+I+  +    Y +  Y+  T
Sbjct: 456 AVVFVILLTMTQAAYAIRSYYHDT 479


>At3g47250.2 68416.m05131 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
 Frame = +3

Query: 114 NELLK*LNTIWKKRTMDRARRNRRGRYQSQNNSTADQYN--------TRTTKPWSFLSGF 269
           NE+ +   TI K    D  R   R  ++  N  T+  YN        T    PW+ LS F
Sbjct: 396 NEVSQFFKTICKDVVFDTRRSYLRNVFEGVNEYTSKTYNGVWAGFRHTHFESPWTALSSF 455

Query: 270 -YSFMIMCCLLSVIYLMLEYHCHT 338
              F+I+  +    Y +  Y+  T
Sbjct: 456 AVVFVILLTMTQAAYAIRSYYHDT 479


>At3g47250.1 68416.m05130 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 480

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
 Frame = +3

Query: 114 NELLK*LNTIWKKRTMDRARRNRRGRYQSQNNSTADQYN--------TRTTKPWSFLSGF 269
           NE+ +   TI K    D  R   R  ++  N  T+  YN        T    PW+ LS F
Sbjct: 396 NEVSQFFKTICKDVVFDTRRSYLRNVFEGVNEYTSKTYNGVWAGFRHTHFESPWTALSSF 455

Query: 270 -YSFMIMCCLLSVIYLMLEYHCHT 338
              F+I+  +    Y +  Y+  T
Sbjct: 456 AVVFVILLTMTQAAYAIRSYYHDT 479


>At5g63560.1 68418.m07977 transferase family protein similar to
           hypersensitivity-related gene product HSR201 - Nicotiana
           tabacum, EMBL:X95343; contains Pfam transferase family
           domain PF00248
          Length = 426

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/70 (21%), Positives = 32/70 (45%)
 Frame = +3

Query: 327 HCHTCNTKCDLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALA 506
           +C T   +  LN ++ ++  + R + ++ + +    I   + ++  P L   + I     
Sbjct: 308 YCVTTAGEVTLNPLSHSVCLVKRAVEMVNDGFMRSAIDYFEVTRARPSLTATLLITSWAK 367

Query: 507 NTVETKDFGW 536
            +  TKDFGW
Sbjct: 368 LSFHTKDFGW 377


>At3g15600.1 68416.m01976 hypothetical protein low similarity to KED
           [Nicotiana tabacum] GI:8096269; contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 591

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/53 (20%), Positives = 34/53 (64%)
 Frame = +3

Query: 363 GITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALANTVET 521
           G+T  +N++    +LM+N ++ +  ++  FS++  + + ++++LEA   ++++
Sbjct: 332 GLTEVVNEMK---NLMENGFKSMNKRMKDFSKKYEEQDKRLKLLEAAIKSIQS 381


>At5g23810.1 68418.m02795 amino acid transporter family protein
           similar to amino acid carrier [Ricinus communis]
           GI:3293031; contains Pfam profile PF01490: Transmembrane
           amino acid transporter protein
          Length = 467

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 240 TKPWSFLSGFYSFMIMCCLLSVI 308
           T+PW  L GF    ++ CLLS++
Sbjct: 433 TRPWLLLRGFSFVCLLVCLLSLV 455


>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 848

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 153 RTMDRARRNRRGRYQSQNNSTADQYNTRTTKPW 251
           R     R + R   +S NN   DQ N + T PW
Sbjct: 50  RPFSSLRTSERSNNRSNNNRRLDQRNHKPTPPW 82


>At1g08590.1 68414.m00952 CLAVATA1 receptor kinase (CLV1) similar to
           receptor-like protein kinase (Ipomoea nil) (U77888)
          Length = 1029

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
 Frame = +3

Query: 327 HCHTCNTKCDLNG-----ITRNINDISRNLSLMKNNY---EDLEIKLSKFSQELPKLEGQ 482
           HCH     CD NG     +  N+N +S N+S    ++   + L++  + F   LPK    
Sbjct: 65  HCHWTGVHCDANGYVAKLLLSNMN-LSGNVSDQIQSFPSLQALDLSNNAFESSLPKSLSN 123

Query: 483 MEILEALANTVETKDFGWNPNSPLLLNAERIQTHSVFDSGNFS 611
           +  L+ +  +V +  FG     P  L      TH    S NFS
Sbjct: 124 LTSLKVIDVSVNS-FFG---TFPYGLGMATGLTHVNASSNNFS 162


>At3g54060.1 68416.m05977 hypothetical protein mucin MUC3, Homo
           sapiens, EMBL:AF007193
          Length = 456

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +3

Query: 372 RNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQ----MEILEALANTVETKDFGWN 539
           RN+ +    L  M N+Y  L+ +     QE  KL+ +      +L+ + N + T +    
Sbjct: 57  RNVPNSLMTLDAMLNHYVSLKKQKVSLDQEKLKLDQEKIRVQNLLQGMENVMNTYNASLT 116

Query: 540 PNSPLLLNAERIQTHSVFDSG 602
              P      + + HS+  SG
Sbjct: 117 APPPASAPTSQQKNHSISSSG 137


>At3g10630.1 68416.m01278 glycosyl transferase family 1 protein
           contains Pfam glycosyl transferase, group 1 family
           protein domain PF00534; C-terminal portion similar to
           mannosyltransferase GB:BAA28328 [Escherichia coli]
          Length = 487

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 219 DQYNTRTTKPWSFLSGFYSFMIMCCLLSVIYL 314
           DQ   R+ +PW F +  YS  I+  LLS+  L
Sbjct: 2   DQPPDRSKRPWKFSTIVYSSSILFLLLSIFLL 33


>At3g52090.1 68416.m05716 DNA-directed RNA polymerase II 13.6 kDa
           subunit (RPB13.6) identical to SP|Q38859 DNA-directed
           RNA polymerase II 13.6 kDa polypeptide (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 116

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 333 HTCNTKCDLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQE 461
           HT +    +    + IND+ + L  +KN +   E +++KFS +
Sbjct: 76  HTTSQSSPMQAYNQAINDLDKELDYLKNQF---EAEVAKFSNQ 115


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +3

Query: 387 ISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALANTVETKDFGWNPNSPLLLNA 566
           +  +L + K    D+E  L K  +EL  L+ +   +EAL    + K       +PL L+ 
Sbjct: 281 LEEDLKVFKKKCSDIEALLEKEKEELKGLKQKCSDIEALLEKEKGKVLAAAARTPLTLDR 340

Query: 567 ERI 575
             I
Sbjct: 341 MNI 343


>At1g59890.1 68414.m06747 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1159

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 369 TRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEAL 503
           T++IN++ + ++L+  ++EDL   L +F   LP   G + + + L
Sbjct: 162 TKSINEVYQEVTLLFQDHEDL---LGEFVHFLPDFRGSVSVNDPL 203


>At1g49950.3 68414.m05604 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 300

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +1

Query: 412 KTIMKT*KSNYQSFLKSYLSLKDKWKYLKPWRTLWKQRILDGIRILLYF*MQREFKRILY 591
           +TI+K  + +   +L+S + LKDKW+ +      W  R    + +   F + ++ +  L 
Sbjct: 29  RTILKDPEFSGVLYLRSNVDLKDKWRNMSVMANGWGSREKSRLAVKRTFSLPKQEENSLA 88

Query: 592 LIQEI 606
           L   +
Sbjct: 89  LTNSL 93


>At1g49950.2 68414.m05603 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 300

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +1

Query: 412 KTIMKT*KSNYQSFLKSYLSLKDKWKYLKPWRTLWKQRILDGIRILLYF*MQREFKRILY 591
           +TI+K  + +   +L+S + LKDKW+ +      W  R    + +   F + ++ +  L 
Sbjct: 29  RTILKDPEFSGVLYLRSNVDLKDKWRNMSVMANGWGSREKSRLAVKRTFSLPKQEENSLA 88

Query: 592 LIQEI 606
           L   +
Sbjct: 89  LTNSL 93


>At1g49950.1 68414.m05602 DNA-binding protein, putative contains
           similarity to DNA-binding protein PcMYB1 [Petroselinum
           crispum] gi|2224899|gb|AAB61699
          Length = 300

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +1

Query: 412 KTIMKT*KSNYQSFLKSYLSLKDKWKYLKPWRTLWKQRILDGIRILLYF*MQREFKRILY 591
           +TI+K  + +   +L+S + LKDKW+ +      W  R    + +   F + ++ +  L 
Sbjct: 29  RTILKDPEFSGVLYLRSNVDLKDKWRNMSVMANGWGSREKSRLAVKRTFSLPKQEENSLA 88

Query: 592 LIQEI 606
           L   +
Sbjct: 89  LTNSL 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,826,310
Number of Sequences: 28952
Number of extensions: 271856
Number of successful extensions: 812
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)