Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g04
         (502 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   5.5  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 320 EKQPPKVLDALQAGASAFKAALEK 391
           ++  PKVL A++ GAS  + ++ K
Sbjct: 434 KQNKPKVLHAIRRGASILRVSMPK 457


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
 Frame = -2

Query: 273 ILLITSFNLFMSILLISG----TPSNNFRAFSSEAFTSSIILESFIHLIMLSTLFFPSFC 106
           I+ I  F+L  +I  + G     P  N  A  ++ F   ++  S++    +   F P F 
Sbjct: 172 IIAIWLFSLGWTIAPMFGWNRYVPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFL 231

Query: 105 SFSKNWSI 82
                W I
Sbjct: 232 IIYSYWFI 239


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
 Frame = -2

Query: 273 ILLITSFNLFMSILLISG----TPSNNFRAFSSEAFTSSIILESFIHLIMLSTLFFPSFC 106
           I+ I  F+L  +I  + G     P  N  A  ++ F   ++  S++    +   F P F 
Sbjct: 48  IIAIWLFSLGWTIAPMFGWNRYVPEGNMTACGTDYFNRGLLSASYLVCYGIWVYFVPLFL 107

Query: 105 SFSKNWSI 82
                W I
Sbjct: 108 IIYSYWFI 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,361
Number of Sequences: 438
Number of extensions: 1811
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)