Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g03
         (541 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3ZLD4 Cluster: Linker histone H1M; n=1; Oreochromis mo...    35   1.0  
UniRef50_Q8C4A8 Cluster: 0 day neonate cerebellum cDNA, RIKEN fu...    33   4.2  
UniRef50_UPI0000E49D21 Cluster: PREDICTED: similar to LOC495497 ...    32   7.3  
UniRef50_A5EBU3 Cluster: Putative thioredoxin related protein; n...    32   7.3  
UniRef50_Q0W1P9 Cluster: Putative indolepyruvate:ferredoxin oxid...    32   7.3  

>UniRef50_Q3ZLD4 Cluster: Linker histone H1M; n=1; Oreochromis
           mossambicus|Rep: Linker histone H1M - Oreochromis
           mossambicus (Mozambique tilapia) (Tilapia mossambica)
          Length = 107

 Score = 35.1 bits (77), Expect = 1.0
 Identities = 20/62 (32%), Positives = 34/62 (54%)
 Frame = +3

Query: 150 NTAKLVMNAFYSVDGKNGVTAADITKYLQEKFGDVWKVSALVGKAEETLKRSAQLGFLDK 329
           +TA +V  A  ++D + GV++  I KY+ EK+  V  ++ L     + LK+  + G L K
Sbjct: 38  STAIMVKEALQALDSRKGVSSQAILKYITEKYPSV-DLARLKTLVRKNLKKGVENGTLVK 96

Query: 330 RG 335
            G
Sbjct: 97  PG 98


>UniRef50_Q8C4A8 Cluster: 0 day neonate cerebellum cDNA, RIKEN
           full-length enriched library, clone:C230076M22
           product:hypothetical protein, full insert sequence; n=1;
           Mus musculus|Rep: 0 day neonate cerebellum cDNA, RIKEN
           full-length enriched library, clone:C230076M22
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 147

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
 Frame = -1

Query: 313 SCALLFKVSSAFPTKALTFHTS-PNFSCKYFVISAAVTPFLPSTL*N---AFMTSFAVFC 146
           +C L F +SS  P+   +F  S P FS    +  +   PFLPS L +   +F+ SF +FC
Sbjct: 61  ACFLSFFLSSFLPSFLPSFLPSFPPFSLPSSLPPSL--PFLPSFLPSFLPSFLPSFLLFC 118

Query: 145 SCSFMFDILC 116
              F+  ILC
Sbjct: 119 LSFFLSGILC 128


>UniRef50_UPI0000E49D21 Cluster: PREDICTED: similar to LOC495497
           protein; n=3; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to LOC495497 protein -
           Strongylocentrotus purpuratus
          Length = 802

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -2

Query: 366 YHGLF*KYTALRVCPRSQAVHSSSKFPRLFQLKR 265
           YH L  KYT L    RS + H SS  PR   L+R
Sbjct: 306 YHNLMDKYTTLLTRSRSASFHESSSKPRTNSLRR 339


>UniRef50_A5EBU3 Cluster: Putative thioredoxin related protein; n=1;
           Bradyrhizobium sp. BTAi1|Rep: Putative thioredoxin
           related protein - Bradyrhizobium sp. (strain BTAi1 /
           ATCC BAA-1182)
          Length = 168

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 165 VMNAFYSVDGKNGVTAADITKYLQEKFGDVWKVSALVGKAEETLKRSAQLGF 320
           V+NAFY    + G+    I+    E FG + K+S  +     TL+R +Q GF
Sbjct: 77  VLNAFYRRYHERGLELIGISADRPEDFGKMRKISGTLAYPTSTLERISQDGF 128


>UniRef50_Q0W1P9 Cluster: Putative indolepyruvate:ferredoxin
           oxidoreductase, alpha subunit; n=1; uncultured
           methanogenic archaeon RC-I|Rep: Putative
           indolepyruvate:ferredoxin oxidoreductase, alpha subunit
           - Uncultured methanogenic archaeon RC-I
          Length = 532

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 105 HLNLHKMSNMKEQEQNTAKLV-MNAFYSVDGKNGVTAADITKYLQEKFGDVWKVSALVGK 281
           H  +  + N K  +QN   ++ +N   ++ G  G T  DIT  +Q  F DV  V+   G 
Sbjct: 438 HTGMQALLNAKYNDQNVLTVIFVNQRAAMTG--GQTVPDITGIVQSTFADVTIVTEAAGL 495

Query: 282 AEETLKRSAQLGFLDKRG 335
             E +K   + G L + G
Sbjct: 496 TTEKVKADLE-GLLKQPG 512


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,634,075
Number of Sequences: 1657284
Number of extensions: 8627199
Number of successful extensions: 23035
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23025
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)