Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g03
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0126 - 25834129-25834214,25834595-25834658,25836201-258365...    29   1.8  
01_06_0791 - 32026086-32026944,32027044-32027600,32027686-320279...    28   5.5  
08_02_0743 - 20647440-20647927,20647997-20648426,20650127-206505...    27   7.2  

>05_06_0126 -
           25834129-25834214,25834595-25834658,25836201-25836521,
           25836912-25837040,25837118-25837177,25837251-25837548,
           25837622-25837776,25837959-25838097,25838185-25838266,
           25838337-25838455,25838537-25838664,25838810-25838983,
           25839052-25839203,25839393-25839425,25840362-25841331,
           25841412-25841537
          Length = 1011

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 444 FDCSHNDGAYVCRVVFAYTDV 382
           F C H + A VC++ F+Y+DV
Sbjct: 320 FPCGHLEAASVCKMCFSYSDV 340


>01_06_0791 -
           32026086-32026944,32027044-32027600,32027686-32027903,
           32028171-32028261
          Length = 574

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 135 KEQEQNTAKLVMNAFYSVDGKNGVTAADITKYLQEKFGDVWKVSALV 275
           KE+     ++  NA+Y   G   + A  +  Y+Q+  G  WKV   V
Sbjct: 173 KERRSRILQVYFNAYYGSIGVAFMVAVTVVVYVQDNLG--WKVGLAV 217


>08_02_0743 -
           20647440-20647927,20647997-20648426,20650127-20650570,
           20650639-20650692
          Length = 471

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = +3

Query: 159 KLVMNAFYSVDGKNGVTAADITKYLQEKFGDVWKVSALVGKAE-ETLKRSAQLGFL 323
           ++++ A   ++ K+G   + I+K+++ K+GD+    A +  A    +K S +L FL
Sbjct: 18  EMILAAIEGLNEKSGSNKSAISKFIEGKYGDLPPAHASLLTAHLARMKESGELIFL 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,708,774
Number of Sequences: 37544
Number of extensions: 237304
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)