Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10g03
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47260| Best HMM Match : ig (HMM E-Value=4.3e-13) 29 2.4
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0) 28 4.2
SB_46351| Best HMM Match : EGF_CA (HMM E-Value=2.3e-14) 28 4.2
SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0) 28 4.2
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9) 27 7.4
SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51) 27 9.8
SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_47260| Best HMM Match : ig (HMM E-Value=4.3e-13)
Length = 402
Score = 29.1 bits (62), Expect = 2.4
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +3
Query: 96 IASHLNLHKMSNMKEQEQNTAKLVMNAFYSVDGKNGVTAADITKYLQEKFGDVWKVSALV 275
I SH+N H S +E N + +N++ D + G +T DVW VS++
Sbjct: 340 IGSHVNYHPASFGIVRENNNNRTSVNSYLQQDCEAGQQCHTLTSSQSASTPDVW-VSSVS 398
Query: 276 G 278
G
Sbjct: 399 G 399
>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1678
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 441 DCSHNDGAYVCRVVFAYT 388
DC +NDG+Y CR YT
Sbjct: 948 DCVNNDGSYTCRCKRGYT 965
>SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 441 DCSHNDGAYVCRVVFAYT 388
DC +NDG+Y CR YT
Sbjct: 74 DCVNNDGSYTCRCKRGYT 91
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 441 DCSHNDGAYVCRVVFAYT 388
DC +NDG+Y CR YT
Sbjct: 302 DCVNNDGSYTCRCKRGYT 319
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 441 DCSHNDGAYVCRVVFAYT 388
DC +NDG+Y CR YT
Sbjct: 401 DCVNNDGSYTCRCKRGYT 418
>SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 299
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 441 DCSHNDGAYVCRVVFAYT 388
DC +NDG+Y CR YT
Sbjct: 25 DCVNNDGSYTCRCKRGYT 42
>SB_46351| Best HMM Match : EGF_CA (HMM E-Value=2.3e-14)
Length = 58
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 441 DCSHNDGAYVCRVVFAYT 388
DC +NDG+Y CR YT
Sbjct: 33 DCVNNDGSYTCRCKRGYT 50
>SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1054
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 441 DCSHNDGAYVCRVVFAYT 388
DC +NDG+Y CR YT
Sbjct: 117 DCVNNDGSYTCRCKRGYT 134
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 441 DCSHNDGAYVCRVVFAYT 388
DC +NDG+Y CR YT
Sbjct: 292 DCVNNDGSYTCRCKRGYT 309
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 441 DCSHNDGAYVCRVVFAYT 388
DC +NDG+Y CR YT
Sbjct: 479 DCVNNDGSYTCRCKRGYT 496
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 441 DCSHNDGAYVCRVVFAYT 388
DC +NDG+Y CR YT
Sbjct: 251 DCVNNDGSYTCRCKPGYT 268
>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
Length = 492
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 29 CLTYWFSCFFFCNPT-FDKYIKCYCISL 109
C Y + FF CNP F + +C+ + L
Sbjct: 46 CFRYVYPVFFVCNPVFFAMFTRCFSLCL 73
>SB_45490| Best HMM Match : zf-U1 (HMM E-Value=0.51)
Length = 477
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = +2
Query: 197 EWRDGGGYNEIFTGKIW-----RRMESKRFSWKSRG 289
+W D GY + + W RR E++ F W +RG
Sbjct: 214 QWEDEEGYRRMEEEQFWEEEQRRRYEAECFDWPARG 249
>SB_21190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Frame = +2
Query: 197 EWRDGGGYNEIFTGKIW-----RRMESKRFSWKSRG 289
+W D GY + + W RR E++ F W +RG
Sbjct: 214 QWEDEEGYRRMEEEQFWEEEQRRRYEAECFDWPARG 249
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,029,386
Number of Sequences: 59808
Number of extensions: 283830
Number of successful extensions: 687
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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