Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10g03
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57670.1 68418.m07207 protein kinase family protein contains ...    28   3.5  
At4g31550.3 68417.m04481 WRKY family transcription factor contai...    27   8.0  
At4g31550.2 68417.m04480 WRKY family transcription factor contai...    27   8.0  
At4g31550.1 68417.m04479 WRKY family transcription factor contai...    27   8.0  

>At5g57670.1 68418.m07207 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 416

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 212 GGYNEIFTGKIW--RRMESKRFSWKSRGNFEEE 304
           GGY+E++ G +W  RR+  KR + K  G+  +E
Sbjct: 113 GGYSEVYRGDLWDGRRIAVKRLA-KESGDMNKE 144


>At4g31550.3 68417.m04481 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 232

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 237 PVNISLYPPPSRHSYRQRC 181
           PVN S  PP + H YR+RC
Sbjct: 179 PVNSSGKPPLAGHPYRKRC 197


>At4g31550.2 68417.m04480 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 324

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 237 PVNISLYPPPSRHSYRQRC 181
           PVN S  PP + H YR+RC
Sbjct: 179 PVNSSGKPPLAGHPYRKRC 197


>At4g31550.1 68417.m04479 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 325

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 237 PVNISLYPPPSRHSYRQRC 181
           PVN S  PP + H YR+RC
Sbjct: 179 PVNSSGKPPLAGHPYRKRC 197


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,575,892
Number of Sequences: 28952
Number of extensions: 198905
Number of successful extensions: 542
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)