Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f24
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)                       27   6.7  
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)               27   6.7  
SB_24426| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_54174| Best HMM Match : EGF (HMM E-Value=0.21)                      27   8.9  

>SB_42523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 359 RSFFCHYIFYKCSKHKCLSCKVT 427
           ++ FC+  F+ C K KC++CK T
Sbjct: 224 KNTFCNCKFHWCCKVKCMTCKET 246


>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
          Length = 934

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 63  RPASVPIGQVWSRFKGKERDGKPAKMS 143
           RP S+P G +   ++G+E D  P+++S
Sbjct: 451 RPHSLPSGYINHSYQGEEEDSLPSRLS 477


>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
          Length = 1110

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 63  RPASVPIGQVWSRFKGKERDGKPAKMS 143
           RP S+P G +   ++G+E D  P+++S
Sbjct: 236 RPHSLPSGYINHSYQGEEEDSLPSRLS 262


>SB_24426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   CVSYLILNAQKLKIQNAISEARQCSHRAGME 97
           C+   + +   +K+QN  +   QC H AGME
Sbjct: 30  CLENRVRHQGGVKLQNICNSEFQCKHAAGME 60


>SB_54174| Best HMM Match : EGF (HMM E-Value=0.21)
          Length = 658

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 276 KRTFNYKDKCRLNQIAFHPSKCLLMF--VQGKLPTYF 172
           K TF Y+     N++A++PS  L  F   + KLP+Y+
Sbjct: 223 KTTFRYESSLWTNKLAYNPSGGLTGFDNQETKLPSYW 259


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,777,824
Number of Sequences: 59808
Number of extensions: 279877
Number of successful extensions: 471
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)