Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f24
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical...    27   5.9  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   7.8  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   7.8  

>AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical
           protein Y116A8C.14 protein.
          Length = 861

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -2

Query: 401 VWNIC-KKYNDKKNFFSYLNVVIIHK*SSIKTIDFFILINTK*NGPLITKIN 249
           +W    KK+N+K++F+ +++ ++     SI  + FF   N K + P  T  N
Sbjct: 792 IWKFLRKKFNNKRSFYVFISAIVFSILLSILLVVFF--GNVKIDCPWCTHFN 841


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
           lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 371 CHYIFYKCSKHKCLSCKVTNMSL 439
           C+YIF K     CLSC+VT   L
Sbjct: 776 CNYIFSKDPVVHCLSCEVTEDDL 798


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
           protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 371 CHYIFYKCSKHKCLSCKVTNMSL 439
           C+YIF K     CLSC+VT   L
Sbjct: 776 CNYIFSKDPVVHCLSCEVTEDDL 798


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,428,703
Number of Sequences: 27780
Number of extensions: 226849
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)