Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f24
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45530.1 68416.m04917 DC1 domain-containing protein contains ...    29   1.4  
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa...    29   1.4  
At2g13800.1 68415.m01523 leucine-rich repeat family protein / pr...    28   3.1  
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr...    28   3.1  
At3g27473.1 68416.m03434 DC1 domain-containing protein contains ...    28   4.2  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    28   4.2  
At1g53050.1 68414.m06007 protein kinase family protein contains ...    27   9.6  

>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 692

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +2

Query: 377 YIFYKCSKHKC---LSCKVTNMSLKRNSFL 457
           Y FYKCSK  C   L  K  N+S K+  FL
Sbjct: 401 YTFYKCSKSNCSFILHEKCANISKKKRHFL 430


>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 373

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
 Frame = +2

Query: 386 YKCSKHKCLSCKV---TNMSLKRN 448
           YKC KH C++CKV   +N+S K +
Sbjct: 271 YKCRKHFCINCKVPWHSNLSCKEH 294


>At2g13800.1 68415.m01523 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 601

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 99  DSIPARWEHWRASEMAFCIFNFCAF 25
           D +  RWE W+  EM    FN+ A+
Sbjct: 552 DGLAERWEEWQKEEMPIHDFNYQAY 576


>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
           protein kinase family protein 
          Length = 620

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 99  DSIPARWEHWRASEMAFCIFNFCAF 25
           D +  RWE W+  EM    FN+ A+
Sbjct: 571 DGLAERWEEWQKEEMPIHDFNYQAY 595


>At3g27473.1 68416.m03434 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 662

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 6/39 (15%)
 Frame = +2

Query: 377 YIFYKCSKHKC---LSCKVTNMSLKRNSFL---PVDFNI 475
           Y FYKCSK  C   L  +  N++ K+  FL   P+D ++
Sbjct: 400 YTFYKCSKSYCGFFLHERCANLATKKRHFLSPQPLDLSL 438


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 422 LYRRGIYVWNICKKYNDKKNF 360
           +Y+   Y+WN C KYN K ++
Sbjct: 278 VYKDVNYIWNNCSKYNKKGDY 298


>At1g53050.1 68414.m06007 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 694

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 40  KNTKCHFRGPPVFPSGRYGVVLK 108
           K  K H+ GP V PSG    VLK
Sbjct: 628 KGHKIHYSGPLVVPSGNMDQVLK 650


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,433,731
Number of Sequences: 28952
Number of extensions: 198945
Number of successful extensions: 383
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)