Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f21
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    33   0.047
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    27   1.8  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    27   1.8  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    27   2.3  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    27   2.3  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   4.1  
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz...    26   4.1  
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    26   4.1  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   5.4  
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.2  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   7.2  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   7.2  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.2  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   7.2  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    25   7.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.5  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   9.5  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    25   9.5  

>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 32.7 bits (71), Expect = 0.047
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 237 WRPLLVPKTEPNFYPAIMHKEQFERLKKQAKVVTQEELLQAMHD-QEAAIQKAAKE 401
           W PLL+   E  +     HKE+ +R+++  + + +E  L  +H  QEAA  K  K+
Sbjct: 12  WHPLLMRNQEKVWKDEQAHKEEMKRVEQLRREIEEERQLLELHRLQEAAGGKKRKD 67


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
 Frame = +3

Query: 285 IMHKEQFERLKKQAKVVTQEELLQAMHDQEAAIQKAAKESEARKQLLKEKLMPQPGAETA 464
           +  K+Q +  ++  K   +EE L+    +    + A KES   ++LL E   P P  + +
Sbjct: 41  LQEKQQKDEQRELKKRKLEEERLKYEEKKLRISRLANKESSRNEELLTETTTPSPAVKAS 100

Query: 465 TGAA------DPELEGPDQTAHTLSRAEIL 536
             +       +  L  P+ T   L+  EI+
Sbjct: 101 PASTKLSVSENDRLSIPEITKDNLTLTEII 130


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 381 IQKAAKESEARKQLLKEKLMPQ 446
           I  A+KE E  K+L++EK++PQ
Sbjct: 109 IYSASKEKEPIKELVREKIIPQ 130


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +3

Query: 273 FYPAIMHKEQFERLKKQAKVVTQEELLQAMHDQEAAIQKAAKESEARKQLL 425
           F+      +QFE  +++ K  + EEL QA+     A+++ AKE + ++++L
Sbjct: 20  FHSTKTSHDQFEETEEEIKKRSPEELKQAIE----ALREKAKEKKEKERIL 66


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 342 EELLQAMHDQEAAIQKAAKESEARKQLLKEKLMPQPGAETA 464
           EE ++A  D+E  I       E R QL  EK +PQ  A+ A
Sbjct: 45  EEDIEAFSDEENKIVHLNNLKEDRFQLWFEKYIPQKAADLA 85


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = +2

Query: 68   SSRGHTLPQRQERKRPWLLPTSQALTMPPKIPN----LKAFHPQMRGAEKRVHHGPAN 229
            +  G   P   E   P L   S A+T+   I +     K  +   R  EKR+H GP N
Sbjct: 1091 AQEGTNQPGASENVEPVLADDSDAVTIHSNISSDDQKRKLVNADDRELEKRLHRGPYN 1148


>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
           Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 264 EPNFYPAIMHKEQFERLKKQAKV-VTQEELLQAMHDQEAAIQKAAKESEARKQ 419
           E  FY ++  KE  ER + Q K+   QEE       +E  +++  ++S+ RKQ
Sbjct: 102 ERQFYDSLEKKEN-ERDRLQEKLRALQEESANLRRQRENRLREEQEQSKRRKQ 153


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
 Frame = +3

Query: 159 FPISKRSIHKCEVPKREYTMVPQIGG--WRPLLVPKTEPNFYPAIMHKEQFERLKKQ--A 326
           F I  R   K + P   +  +  + G  W+ L   + EP    A   KE++ER +K+   
Sbjct: 26  FSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQDKERYERERKEYDT 85

Query: 327 KVVTQEELLQAMHDQEAAIQK 389
           K+   E+  +A     AA  K
Sbjct: 86  KLANGEKTGKASAPAAAAAAK 106


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 219 VPQIGGWRPLLVPKTEPNFYPAIMHK 296
           +P +  WR + VPK+E     AIM K
Sbjct: 658 MPNLVNWRKVCVPKSEMEEKEAIMEK 683


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 65  RSSRGHTLPQRQERKRPWLLPTSQALTMPPK 157
           R S   T+P R  R   WL PT  A T+P K
Sbjct: 23  RKSINMTIPVRALRCPIWLWPTYDAQTIPWK 53


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 22/84 (26%), Positives = 36/84 (42%)
 Frame = +2

Query: 119 LLPTSQALTMPPKIPNLKAFHPQMRGAEKRVHHGPANRWLASSVSAEDRTELLSSYHA*G 298
           L P S   +  P++ NLK      + +   +    +N   +S     DR+ L SS     
Sbjct: 126 LEPPSSNSSSSPQLQNLKHQLSSPQPSRAPIDRSSSNPVTSSQQPPNDRSTLSSSQK--- 182

Query: 299 AIRKVEETS*SRNPRGAPPSHARS 370
           A R ++ +   +N   A PS +RS
Sbjct: 183 AKRPLKRSYSEKNSSNAEPSGSRS 206


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 297 EQFERLKKQAKVVTQEELLQAMHDQEAAIQKAAKESEARKQLLKEK 434
           E     +++A    +EE  + +H+QE A ++A +E     +  KE+
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKRAIEERTRAAREAKER 833


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 141  SQCRLKFPISKRSIHKCEVPKREY-TMVP 224
            S+C +    SK+SI  CE+ K E+ T VP
Sbjct: 1223 SKCPIVEKNSKKSIFSCEITKVEFHTAVP 1251


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +3

Query: 306 ERLKKQAKVVTQ--EELLQAMHDQEAAIQKAAKESEARKQLLK-EKLMPQPGAETATGAA 476
           E+L+   KV     EEL  ++    +  + AAKES+ +K LL  E+      A       
Sbjct: 196 EKLENATKVEKSAPEELFASLKKSASQKKSAAKESKPKKVLLDIEQTFTARPARGGRPNR 255

Query: 477 DPELEGPDQTAHTLSRA 527
            P   GP +TA    +A
Sbjct: 256 APR-RGPSETASKTQQA 271


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 366 DQEAAIQKAAKESEARKQLLKEK 434
           D E  I++ AK +E RKQ LKE+
Sbjct: 109 DAEREIRENAKRAEYRKQWLKEQ 131


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 312  LKKQAKVVTQEELLQAMHDQEAAIQKAAKESEARKQLLKEK 434
            L+   ++ T E  L  + ++ AA +KAAK ++ R   +K+K
Sbjct: 1025 LRAIERLETVETRLAKLDEEFAAARKAAKNAKERFNAVKQK 1065


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 359 GLEELLLGYDFSLFLQPFELLLM 291
           G EELL+GY F L   PF+ + +
Sbjct: 238 GNEELLMGYGFCLPDNPFDTVTL 260


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
 Frame = +2

Query: 56  SCERSSRGHTLPQRQERKRPWLLPTS----QALTMPPKIPNLKAFHPQMRGAEKRVHHGP 223
           SC+   R   +PQ      P  LP+     Q ++ PP IPNL             +H+ P
Sbjct: 148 SCQPVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPNLPKLQVHPNRLPHPIHNHP 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,962
Number of Sequences: 5004
Number of extensions: 48329
Number of successful extensions: 195
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)