Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10f20
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 33 0.054
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.2
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 28 1.5
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c... 27 2.0
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 27 2.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 3.5
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 27 3.5
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 26 6.2
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.2
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 32.7 bits (71), Expect = 0.054
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = +3
Query: 120 IHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTN---YTNHRKPNLK 290
+++ S +S+ ++ V+ ED ++++ +FKHN+ Y H+ P+++
Sbjct: 61 VNDSSTDSLIRWSDRGDSFLVIGHEDFAKLVLPRYFKHNNFSSFVRQLNMYGFHKVPHIQ 120
Query: 291 SNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKA 398
V +E+L + ++D ++T KA
Sbjct: 121 QGVLQSDSPNELLEFANPNFQRDQPELLCLVTRKKA 156
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +3
Query: 159 NGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMK 338
NGNE V+ E + +F N + L N T++RKP N K+ +
Sbjct: 891 NGNEVPAVLPPELIPPSTRNFTESLNQVKNLIKNDTSNRKPFGAENQ-SKLKKNSFYDNP 949
Query: 339 QQSHEKDMT 365
++ EKD T
Sbjct: 950 SETTEKDAT 958
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = +3
Query: 249 LTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPS 377
+ NY NH PN++ + + ++ K +TY PS
Sbjct: 253 MNPNYVNHSLPNVRPHTLESVMPHNCTKNAMDLLHKMLTYVPS 295
>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
complex subunit Rrn5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 556
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 183 VISEDVSEMI-PDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEML 329
+I + E+I F + RKL N HRKP +K+ D +LS + L
Sbjct: 229 IIKSKLKELIGTSIFLAESRFRKLEANNAFHRKPIIKNR--DVVLSGKFL 276
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 582 HESLAQPHGLSVKKPHGACSCMMKSPTSFNHQTDP 686
H L + +S +KPH A S +K+PT+ + +P
Sbjct: 191 HTQLPKTSAVSHQKPHEAPSTAVKAPTATVAENEP 225
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/73 (23%), Positives = 31/73 (42%)
Frame = +3
Query: 165 NETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQ 344
N T ++V + + E++P FF N T N + NL+ + F + S
Sbjct: 782 NSTAQLVSPDSIQELVPSTFFSSN------TKKDNIEEENLEPHSFS--FDSTLASSSDN 833
Query: 345 SHEKDMTYSPSIL 383
++D + SI+
Sbjct: 834 DEQRDFASNSSIV 846
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +3
Query: 99 FTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFF 224
+++ ++ I +I+G+ +F N + + +++ +SE P FF
Sbjct: 368 YSLNMLSIEMENIEGSLYFGNAQLSNLICVNQYLSEQRPVFF 409
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.2
Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 3/151 (1%)
Frame = +3
Query: 267 NHRKPNLKSNVFDKMLS-DEMLSMKQQSH--EKDMTYSPSILTWNKASIPTPTLELKQKW 437
N NL S +F+K + +E+L + S EK + ++ TW K E W
Sbjct: 372 NSEASNL-STLFEKSGNFEEILGSESHSSITEKTRDIAKNVATWLKNG------ENFSSW 424
Query: 438 PVIEFLANSGRSENDSQQNNDSQGETRRVGNTFVENSENKVLGLRSLVHESLAQPHGLSV 617
P+ + + S + + DSQ +V +TFV++S++ +S+ +S ++ H L+
Sbjct: 425 PLPPLMDLASLSVAEPR---DSQPSVSQVNDTFVKSSDSTFPSSQSM--QSPSKLHSLTS 479
Query: 618 KKPHGACSCMMKSPTSFNHQTDPTKICTXTD 710
S +K + D ++ D
Sbjct: 480 NATDLLSSSSLKKNFFSQQEADEVELSNNYD 510
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 6.2
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +3
Query: 96 VFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYT-NH 272
V+T F+ E++++ + H S GN R + ++ S + NY+ +H
Sbjct: 94 VWTKFISEVNSYDKEKENHLSTGNHELRRTTPLKIGPLLLTRIGLLKSKNTASNNYSVDH 153
Query: 273 RKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSP 374
NL ++ + +L+ ++ + + SH + + P
Sbjct: 154 IVSNLAND--NTLLNRQVSTEEWNSHLRHLLNIP 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,202
Number of Sequences: 5004
Number of extensions: 61759
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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