Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10f20
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639... 32 0.52
11_01_0327 - 2446949-2446999,2447060-2447299,2447542-2447813,244... 29 2.8
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 29 3.7
01_01_0610 + 4533141-4533310,4534889-4535075,4535232-4535323,453... 29 4.9
12_02_0851 + 23668618-23670639 28 6.4
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31... 28 8.5
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 28 8.5
>03_05_0916 -
28762214-28762414,28763144-28763242,28763573-28763998,
28764259-28764501,28764706-28764927,28765392-28765721,
28767380-28767800,28768292-28768404,28769224-28769367,
28769439-28769570,28769802-28770013,28770983-28771505
Length = 1021
Score = 31.9 bits (69), Expect = 0.52
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +3
Query: 168 ETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQ- 344
E+ V+ + S+ I + F N L +Y PNL+S + MLS + +
Sbjct: 637 ESSLYVLERNPSDTI-ELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMSVSGINPNL 695
Query: 345 SHEKDMTYSPSILTWNK 395
+E Y +L W+K
Sbjct: 696 QNELVQLYLSEVLDWHK 712
>11_01_0327 -
2446949-2446999,2447060-2447299,2447542-2447813,
2447917-2447956,2448057-2448134,2448212-2448271,
2448434-2448493,2449620-2449766,2449921-2450018,
2450455-2450582,2451275-2451321
Length = 406
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/103 (19%), Positives = 38/103 (36%)
Frame = +3
Query: 258 NYTNHRKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLELKQKW 437
NY + L V + + + H D T + T + P PTL++ W
Sbjct: 23 NYFGELEEALMQQVATLRRTQQTATTTSTLHHGDTTPFSTTATAAATARPPPTLDIFPSW 82
Query: 438 PVIEFLANSGRSENDSQQNNDSQGETRRVGNTFVENSENKVLG 566
P + L N + DS+ ++ N + ++ ++G
Sbjct: 83 P-MRSLHTPKEGSNVTADTTDSESSSKNNSNQNASSDQHVLVG 124
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -1
Query: 691 FVGSV*WLKD-VGLFIMQLHAPC-GFLTDSPWGCANDSCTRLLN 566
F+ S+ WL + F +HA FL+D W C D + +LN
Sbjct: 474 FLSSIEWLTSTIHTFYRDVHAHLISFLSDLKWSCKIDLVSNMLN 517
>01_01_0610 +
4533141-4533310,4534889-4535075,4535232-4535323,
4536203-4536308,4536441-4536649,4537049-4537091,
4537413-4537645,4537762-4538233
Length = 503
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 327 LSMKQQSHEKDMT-YSPSILTWNKASIPTPTLELKQKWPVIEFLANSGRSENDSQQNNDS 503
++M S E DM Y +++ S+P + E+ + W E+ + E+DS +DS
Sbjct: 432 IAMAGSSAEVDMVHYRDFLMSSVPVSLPGNSKEVSRFWGPQEYSDDEDEDEDDSNDEDDS 491
Query: 504 QGE 512
E
Sbjct: 492 DEE 494
>12_02_0851 + 23668618-23670639
Length = 673
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +3
Query: 513 TRRVGNTFVENSENKVLGLRSLVHESLAQPHG-----LSVKKPHGACSCMMKSPTSFNHQ 677
T+R+ + F E + ++ G SLVH+SL L + + A C K F++Q
Sbjct: 330 TQRLAHCFAEGLQARIAGTGSLVHQSLVAKRTSAVDILQAYQLYMAAICFKKVSFIFSNQ 389
Query: 678 T 680
T
Sbjct: 390 T 390
>04_01_0021 +
311914-312399,314218-314310,314391-314672,314754-314826,
315273-315405,315476-315629,315763-315843,316174-316296,
316629-316787,316862-316996,317159-317254,317416-317910,
318651-318722,319496-319537
Length = 807
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 441 VIEFLANSGRSENDSQQNNDSQGETRRVGNTFVENSENKV 560
VI+ NSG + + S Q ND+ GE++++G+ ++S + +
Sbjct: 641 VIDSSKNSGENLDSSMQKNDN-GESQQLGDAPADSSSSAI 679
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 26 GTQKPSFKFIIM*VCYDFCVSHFSVYNI 109
GTQK +F F + V + FC+ +YNI
Sbjct: 214 GTQKVAFMFAPIVVIWLFCIGGIGLYNI 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,074,433
Number of Sequences: 37544
Number of extensions: 331431
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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