Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f20
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                32   0.40 
SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)                   29   2.8  
SB_27918| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)                    29   5.0  
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_51992| Best HMM Match : C2 (HMM E-Value=0.00041)                    29   5.0  
SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_10877| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_38362| Best HMM Match : BRCT (HMM E-Value=0)                        28   6.6  
SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)          28   6.6  
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            28   8.7  
SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)                 28   8.7  

>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
 Frame = +3

Query: 300  FDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLELKQKWPVIEFLANSGRSEN 479
            ++ M  D+++S+    HE   +Y PS    N ++IP P L  +   P +       +++ 
Sbjct: 1426 YEDMDMDDVISV----HEFFRSYEPSKHEQNLSAIPLPVLLPEVAEPKVTSEIRKRQNKA 1481

Query: 480  DSQQNNDSQGETRRVGNTFVENSENKVLGLRSLVHESLAQPHGL-SVKKPHGACSCMMKS 656
            +  Q  +      +  N+  + +EN+   +     +S  QP  L  +  P G       +
Sbjct: 1482 EKAQPAEKSKMQTKSENSKDQKTENETSKVEKAQDKSTVQPTSLRPLALPTGEPEVKTTT 1541

Query: 657  PTSFNHQTDPT 689
             +  NH T+ T
Sbjct: 1542 TSEVNHVTEKT 1552


>SB_55980| Best HMM Match : rve (HMM E-Value=3.8e-23)
          Length = 1268

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = +3

Query: 423 LKQKWPVIEFLANSGRSENDSQQNND 500
           ++++W + EF+ N+G+ E +++Q ND
Sbjct: 105 IEKRWNLTEFIENAGQKEENNKQVND 130


>SB_27918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/72 (26%), Positives = 31/72 (43%)
 Frame = +3

Query: 129 FSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDK 308
           FSI+  K  S      +V   EDV+ +   +  K  S +      +   + NLK    D 
Sbjct: 180 FSIRADKPKSKPKTDSQVEDEEDVTNLELSYVKKFQSFQDRKIKLSKEEQSNLKKARLDG 239

Query: 309 MLSDEMLSMKQQ 344
            L +EML  +++
Sbjct: 240 RLHEEMLDRREK 251


>SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)
          Length = 706

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/72 (20%), Positives = 30/72 (41%)
 Frame = +3

Query: 144 TKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDE 323
           TKH  N ++T R+             + +H +  +   NYT H   +  ++++ + +SD 
Sbjct: 338 TKHV-NASQTARIYTQHLNESQTVRIYTQHVNDSQTARNYTQHVNDSQTAHIYTQHVSDS 396

Query: 324 MLSMKQQSHEKD 359
             +     H  D
Sbjct: 397 QTARIYTQHVND 408


>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2306

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +3

Query: 234 NSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSIL-TWNKASIPT 410
           N   ++ T   NH  P  K N      +      K +++EKD      ++ T +   +  
Sbjct: 166 NDFTRMKTKLNNHFLP--KKNKHHARYTFN--KQKMETNEKDERILEHLIQTISDGDLVK 221

Query: 411 PTLELKQKWPVIEFLANSGRSENDSQQNND 500
             +E   +W + EF+ N+G+ E  ++Q ND
Sbjct: 222 RAIE--NRWNLTEFIENAGQKEEINKQVND 249


>SB_51992| Best HMM Match : C2 (HMM E-Value=0.00041)
          Length = 391

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/74 (24%), Positives = 33/74 (44%)
 Frame = +3

Query: 459 NSGRSENDSQQNNDSQGETRRVGNTFVENSENKVLGLRSLVHESLAQPHGLSVKKPHGAC 638
           N+  + N +  NN++    ++ G+   +  + K       +H  L     LS  K    C
Sbjct: 307 NNNNNNNRNSNNNNNNNNNKKEGSVICQGLDYKCR--YRTIHWKLFSVR-LSCYKNVVHC 363

Query: 639 SCMMKSPTSFNHQT 680
              +K+ TSF+H+T
Sbjct: 364 QISLKNKTSFSHRT 377


>SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 984

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 336 KQQSHEKDMTYSPSILTWNKASIPTPT 416
           KQQ H  + T + S+LT N  S  TPT
Sbjct: 228 KQQEHPPNTTLNESLLTSNSGSSQTPT 254


>SB_10877| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/58 (32%), Positives = 29/58 (50%)
 Frame = +3

Query: 285 LKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLELKQKWPVIEFLA 458
           LK N  D   +DEML++ +Q +    TY   +L++  A   +   E K+K    E LA
Sbjct: 49  LKHNGLD---ADEMLAINEQKYGVKSTYDSEMLSYTTALEKSSNQEFKEKERKAERLA 103


>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
          Length = 1572

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 390  NKASIPTPTLELKQKWPVIEFLANSGRSENDSQQNNDS-QGETRRVGNTFVENSENKVL 563
            ++  +P P  + K + P IE   N G +E+  QQN+ S Q E     +   EN + + L
Sbjct: 1012 SRVVLPGPE-QSKPEHPTIEDANNKGSAESSHQQNDKSQQSEDMEDNDNAAENDKQEDL 1069


>SB_27468| Best HMM Match : Peptidase_C48 (HMM E-Value=0.0026)
          Length = 766

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
 Frame = +3

Query: 192 EDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKML-----SDEMLSMKQQSHEK 356
           E ++++I DF+ K+  H KLT    +  + ++ S+ F K L     S+  LS+ ++ H +
Sbjct: 655 EFLNDVIIDFYLKYIFHEKLTD--FDRERTHIFSSFFYKRLTQRASSETNLSVIERMHSQ 712

Query: 357 DMTYSPSILTWNKASIPTPTLE 422
             T++  +  + K  I  P  E
Sbjct: 713 VKTWTKYVDIFQKDFIVVPINE 734


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
 Frame = +3

Query: 303 DKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLELKQ--KWPVIEFLANSGRSE 476
           D  +   + SM +  H++   YSP+  T++++S      +L++   +     +A S R+ 
Sbjct: 488 DDAIPVRVSSMSRTDHDRVDNYSPTDDTYSRSSTLQSRADLRRGIDYAKTNDVARSSRTV 547

Query: 477 NDSQQNNDSQGETRRV---GNTFVENSENKVLGLRSLVHESLAQPH 605
           ++S+  + S  + +R+   G    ++  N +  L S  +E   +PH
Sbjct: 548 SESRGGDYSSMDDQRLTDDGYYSKDSYANHLRSLSSSSNELAPKPH 593


>SB_51861| Best HMM Match : RVT_1 (HMM E-Value=1.2e-10)
          Length = 1318

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 423 LKQKWPVIEFLANSGRSENDSQQNND 500
           ++++W + EF+ N+G+ E  ++Q ND
Sbjct: 213 IEKRWNLTEFIENAGQKEKINKQVND 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,956,100
Number of Sequences: 59808
Number of extensions: 416392
Number of successful extensions: 1268
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)