Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f20
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF082012-1|AAD03024.1|  437|Caenorhabditis elegans UDP-N-acetylg...    30   1.4  
Z50756-3|CAI79214.1|  305|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled rel...    28   5.8  
AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine re...    28   5.8  
AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm rec...    28   5.8  
Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z75711-11|CAB00038.1|  755|Caenorhabditis elegans Hypothetical p...    28   7.7  
Z75710-10|CAB00029.1|  755|Caenorhabditis elegans Hypothetical p...    28   7.7  
AL132948-13|CAD31815.2|  509|Caenorhabditis elegans Hypothetical...    28   7.7  
AF273839-1|AAG15186.1|  470|Caenorhabditis elegans nuclear recep...    28   7.7  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 1/148 (0%)
 Frame = +3

Query: 111  LIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLK 290
            +++  N  I  +K   + ++   ++ S   + ++      H+   K + +     K + K
Sbjct: 630  IVDAENAGIASSKASKSADDKIEILASHGSNSILKS---AHDQASKASKSSRKRSKKSKK 686

Query: 291  SNVFDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLELKQKWPVIEFLANSGR 470
            SN      SDE L   Q       T S S ++ + +     T E     P  E ++   +
Sbjct: 687  SNETSSSSSDERLIHSQSPPTPQNTTSSSDVSSSSSGGSASTSESSSSAPSAEQVSTPKK 746

Query: 471  SENDSQQNNDSQ-GETRRVGNTFVENSE 551
            S+ + ++  D Q GE        +EN+E
Sbjct: 747  SKKNKEKRRDQQHGERSSRETERLENNE 774


>Z46381-1|CAA86513.1|  437|Caenorhabditis elegans Hypothetical
           protein M01F1.1 protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 153 FSNGNETRRVVISEDVSEMIPDFFFKHNSHRKL 251
           FSN N    V+I+ED  ++ PDFF   ++ R L
Sbjct: 183 FSNSNNYSSVIITEDDLDIAPDFFSYFSNTRYL 215


>AF082012-1|AAD03024.1|  437|Caenorhabditis elegans
           UDP-N-acetylglucosamine:a-3-D-mannosideb-1,
           2-N-acetylglucosaminyltransferase I protein.
          Length = 437

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 153 FSNGNETRRVVISEDVSEMIPDFFFKHNSHRKL 251
           FSN N    V+I+ED  ++ PDFF   ++ R L
Sbjct: 183 FSNSNNYSSVIITEDDLDIAPDFFSYFSNTRYL 215


>Z50756-3|CAI79214.1|  305|Caenorhabditis elegans Hypothetical
           protein T08D10.4 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
 Frame = +3

Query: 204 EMIPDFFFKHNSHRKLTTNY-TNHRKPNLKSNVFDKMLSDEMLSMKQQSHEKDMTYSPSI 380
           E +P  FF+    R+ T    +N R   + S +  KM  D++   KQ     + T+S  +
Sbjct: 36  EDVPLSFFEECEIRQKTLKLVSNPRLTIVASQLLSKM--DQLKLKKQNVGLLNNTFSGVV 93

Query: 381 LTWNKASIPTP--TLELKQKWPVIEFLANSGRSENDSQQNNDSQ 506
           LT   + + +   T     K   IE + N    END+  NN +Q
Sbjct: 94  LTSISSDLASNNVTEHFHDKSLKIEQMKNKTIRENDNSHNNQTQ 137


>Z81589-2|CAB04724.1|  728|Caenorhabditis elegans Hypothetical
           protein T08G5.2 protein.
          Length = 728

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 537 VENSENKVLGLRSLVHESLAQPHGLSV---KKPHGACSCMMKSPTSFNHQTDPT 689
           V+N E  +L    L+  ++A PHG +V     PH     +M++ T+ +HQ   T
Sbjct: 352 VQNQELNLLLFDFLIGVTVAPPHGPTVTTMSTPHTTMKTIMQNLTTSSHQVATT 405


>U58760-9|AAK31465.1|  654|Caenorhabditis elegans Dishevelled
           related protein 2 protein.
          Length = 654

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +3

Query: 213 PDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKML-SDEMLSMKQQSHEKDMTYSPSILTW 389
           P  + +H  H K    + +HR+ + + + FD    SD+        +++D   S SI   
Sbjct: 252 PQAYERHLPHMKHNNRHNHHRQNHYEESTFDVTTESDDHYRDGVTYYDEDEDDSRSI--- 308

Query: 390 NKASIPTPTLELKQKW 437
           N        + LKQKW
Sbjct: 309 NTDLTSVSQVHLKQKW 324


>AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein68 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 60  CEFVMIFVFHILVFTIFLIEIHNF 131
           C FV++F + + VFT F I I+ F
Sbjct: 78  CGFVILFCYELSVFTHFAISINRF 101


>AF016446-13|AAC24172.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 211 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +3

Query: 69  VMIFVFHILVFTIFLIEIHNFSIQGTKHFSNGNETRRVVISEDVSEMIPDFFFKHNSHRK 248
           + IF+ HI   T+F+    NF       F +G  +  + +   +  +     F H  +RK
Sbjct: 260 IPIFLMHIPALTMFIFTFLNFD----AGFLSGTVSLTIALFPTLDPLPTMLIFCH--YRK 313

Query: 249 LTTNYTNHRKPNLKSNVFDKML 314
             TNY   R   ++   F + L
Sbjct: 314 AITNYIRTRYKKVRKTKFCRCL 335


>Z93386-2|CAB07647.1|  387|Caenorhabditis elegans Hypothetical
           protein R11H6.3 protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +3

Query: 288 KSNVFDKMLSDEMLSMKQQSHEK-DMTYSPSILTWNKASIPTPTL 419
           ++  + K +S+ ML+ K++ +    +T SP+  T N+ ++P P L
Sbjct: 69  RAGFYKKRVSNPMLTPKKKRNSSASVTSSPARSTTNRLAVPNPPL 113


>Z75711-11|CAB00038.1|  755|Caenorhabditis elegans Hypothetical
           protein D1081.8 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 396 ASIPTPTLELKQKWPVIEFLANSGRSENDSQQNNDSQGETRRVGNTFVENSENKVLGLR- 572
           AS+PTP  + +   P  + +  +   E++  ++   +  + R  N    N+EN+V  ++ 
Sbjct: 461 ASLPTPKNDFEVVGPDDDEVEGAVEDESNQDEDGWIEDASERAENKAKRNAENRVRNMKM 520

Query: 573 --SLVHESLAQP 602
              ++  SL +P
Sbjct: 521 RSQVIQRSLPKP 532


>Z75710-10|CAB00029.1|  755|Caenorhabditis elegans Hypothetical
           protein D1081.8 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +3

Query: 396 ASIPTPTLELKQKWPVIEFLANSGRSENDSQQNNDSQGETRRVGNTFVENSENKVLGLR- 572
           AS+PTP  + +   P  + +  +   E++  ++   +  + R  N    N+EN+V  ++ 
Sbjct: 461 ASLPTPKNDFEVVGPDDDEVEGAVEDESNQDEDGWIEDASERAENKAKRNAENRVRNMKM 520

Query: 573 --SLVHESLAQP 602
              ++  SL +P
Sbjct: 521 RSQVIQRSLPKP 532


>AL132948-13|CAD31815.2|  509|Caenorhabditis elegans Hypothetical
           protein Y39B6A.17a protein.
          Length = 509

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 177 RVVISEDVSEMIPDFFFK-H-NSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSH 350
           R+ I +   E++  +    H N HRKL  N  + RK ++++ V  + L+D       ++ 
Sbjct: 397 RIFIDKPYDELLEKYVLNLHPNDHRKLEKNLADFRKFHMENVVPQRFLADFYFQGTFENE 456

Query: 351 EK 356
           EK
Sbjct: 457 EK 458


>AF273839-1|AAG15186.1|  470|Caenorhabditis elegans nuclear receptor
           NHR-95 protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 177 RVVISEDVSEMIPDFFFK-H-NSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSH 350
           R+ I +   E++  +    H N HRKL  N  + RK ++++ V  + L+D       ++ 
Sbjct: 358 RIFIDKPYDELLEKYVLNLHPNDHRKLEKNLADFRKFHMENVVPQRFLADFYFQGTFENE 417

Query: 351 EK 356
           EK
Sbjct: 418 EK 419


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,065,929
Number of Sequences: 27780
Number of extensions: 342601
Number of successful extensions: 960
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)