Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f20
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29860.1 68414.m03650 WRKY family transcription factor simila...    31   0.76 
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica...    30   1.3  
At1g12120.1 68414.m01404 expressed protein contains Pfam domain ...    30   1.8  
At5g66330.1 68418.m08363 leucine-rich repeat family protein cont...    27   9.4  
At5g11330.1 68418.m01323 monooxygenase family protein low simila...    27   9.4  
At5g07140.1 68418.m00814 protein kinase family protein contains ...    27   9.4  

>At1g29860.1 68414.m03650 WRKY family transcription factor similar
           to DNA-binding protein 2 GI:4322940 from [Nicotiana
           tabacum]
          Length = 282

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
 Frame = +3

Query: 258 NYTNHRKPNLKSNVFDKMLSD---EMLSMKQQSHEKDMTYSPSILTWNKAS--IPTPTLE 422
           ++  H        V  K LSD     L M   S EK   +SP    +   S  +  P L 
Sbjct: 3   DHVEHNYNTSLEEVHFKSLSDCLQSSLVMDYNSLEKVFKFSPYSSPFQSVSPSVNNPYLN 62

Query: 423 LKQKWPVIEFLANSG---RSEND-SQQNNDSQGETRRVGNT 533
           L    PV+   +N G    + ND S Q  D++G+   VG +
Sbjct: 63  LTSNSPVVSSSSNEGEPKENTNDKSDQMEDNEGDLHGVGES 103


>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|O14981
            TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
            sapiens}; contains PFam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 2049

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +3

Query: 300  FDKMLSDEMLSMKQQSHEKDMTYSPSILTWNKASIPTPTLELKQKWPVIE 449
            FDK+LS   L+++  + ++ + ++ ++  WNK S    +LE KQ +  +E
Sbjct: 1013 FDKLLSTNKLNVESVTADETIDFASTLDLWNKESAGNESLE-KQVFEDVE 1061


>At1g12120.1 68414.m01404 expressed protein contains Pfam domain
           PF05904: Plant protein of unknown function (DUF863)
          Length = 483

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
 Frame = +3

Query: 162 GNETRRVVISEDVSEMIPDFFFKHNS--HRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSM 335
           G    R+VI  D+ E  P +     +  H + + +Y   R P+ K + FD++ S+ ++ +
Sbjct: 111 GKRNPRIVI--DLEEPPPTWVSHRETTEHAQASVSYVTVRNPDTKPSFFDRISSNILMDV 168

Query: 336 KQQ--SHEKDMTYSPSILTWNKASIPTPTLELKQKWPVIEFLANSGRSENDSQQNNDSQG 509
            Q     + D T S      +  S P      + ++ +++ L N    E +++ + +  G
Sbjct: 169 DQSLVEDDSDKTTSKESSLLDLNSTPVDESVSEPRYSLLQDL-NCAYIEEETETSYEKSG 227


>At5g66330.1 68418.m08363 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-5B
           [Lycopersicon esculentum] gi|3894391|gb|AAC78595
          Length = 418

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
 Frame = +3

Query: 102 TIFLIEIHNFSIQGT--KHFSNGNETRRVVISED-VSEMIPDFFFKHNSHRKLTTNYTNH 272
           +I  I + N   QGT  + F   N    + +S + +S  IP F F H S ++LT ++   
Sbjct: 222 SIVQISMRNNLFQGTIPESFKLLNSLEVIDLSHNKLSGSIPSFIFTHQSLQQLTLSFNGF 281

Query: 273 RKPNLKSNVFDKM-LSDEMLSMKQQSHE 353
              +L+S  +  + L  E++S+   +++
Sbjct: 282 --TSLESPYYSPLGLPSELISVDLSNNQ 307


>At5g11330.1 68418.m01323 monooxygenase family protein low
           similarity to 2,6-dihydroxypyridine 3-hydroxylase (DHPH)
           [GI:14495302] [Arthrobacter nicotinovorans]; contains
           Pfam profile PF01360: Monooxygenase
          Length = 408

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +3

Query: 195 DVSEMIPDFFFKHNSHRKLTTNYTNHRKPNLKSNVFDKMLSDEMLSMKQQSHE 353
           D+ E     F++  + +     Y N  +P+LKSN     +S EM++   Q  E
Sbjct: 222 DLGEQTHSVFYELFNKKLNWIWYVNQPEPDLKSNSVTLKVSQEMINKMHQEAE 274


>At5g07140.1 68418.m00814 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 583

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 498 DSQGETRRVGNTFVENSENKVLGLR--SLVHESLAQPHGLSVKKPHGACSC 644
           + +G T  V    VE+ + K+  ++  + +  ++ +P   SVK P G C C
Sbjct: 206 EKKGLTLGVVLLLVESGQEKMFKVKVVNALRSAVRKPKSTSVKLPFGLCGC 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,785,465
Number of Sequences: 28952
Number of extensions: 301954
Number of successful extensions: 862
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)