Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f19
         (413 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9764| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05)                  29   1.1  
SB_7583| Best HMM Match : PT (HMM E-Value=6.1)                         29   2.0  
SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_53038| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.6  
SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.1  

>SB_9764| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-05)
          Length = 434

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +3

Query: 63  VFGKVQGVF--FRKFTQKKALELGLKGWVMNTAQGTVIG-QLQGPSTAVDDMKLWLQKVG 233
           VF +   VF  FR FT+  A +L +  W++      V+   ++  S  +DD       +G
Sbjct: 192 VFDRYMAVFHPFRTFTRAFAKKLVIAAWIVGAILAVVLTLPIKNMSIELDDNVYTFSCIG 251

Query: 234 SPKSKIEKAAF 266
           S     EK  F
Sbjct: 252 SSNEVWEKVVF 262


>SB_7583| Best HMM Match : PT (HMM E-Value=6.1)
          Length = 501

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 185 SLKLTYNSSLRRIHY-PSLKSKF*CFLLRKLPEEYSLHFSKN 63
           S+K  ++S+ RRI   PS+ S + C L R +P E   H +K+
Sbjct: 459 SIKEIHDSTHRRIRSNPSMASPYHCCLSRGIPREVRSHENKH 500


>SB_47366| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 156 QGTVIGQLQGPSTAVDDMKLWLQKVGSPKSKIEKAAFRNEGN 281
           +GT IGQ++GP  A  D + W+        +I+   F +EGN
Sbjct: 298 KGTGIGQMKGPCGAAVDGENWVLVADRDNHRIQ--VFDSEGN 337


>SB_53038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -2

Query: 133 LSPSSNAFFCVNFLKNTPCTFP 68
           LSPS +A  CV+++++T C+ P
Sbjct: 20  LSPSGDASGCVDYIRSTHCSGP 41


>SB_45168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 322 HLRISNVLKAQHLIFPSFLNAAFSILDFGLP 230
           H+R   +    +LI P FL  AF++L F LP
Sbjct: 123 HIRRKVLFYFNNLIVPCFLITAFALLTFVLP 153


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 181 KDPRLLLMT*SFGYKRSEAQNLRSRKRRSGMREILNAAL 297
           KD   L    SF Y+  +  NLR   R S ++E+ +A+L
Sbjct: 738 KDSGRLHTKNSFNYENVDRYNLRIEARTSSVQEVASASL 776


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,699
Number of Sequences: 59808
Number of extensions: 206848
Number of successful extensions: 460
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)