Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f18
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)                    47   1e-05
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_22867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_17212| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_2014| Best HMM Match : MAM (HMM E-Value=0)                          29   4.4  
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)                   28   5.8  
SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)                  28   7.7  

>SB_46189| Best HMM Match : bZIP_2 (HMM E-Value=3.3)
          Length = 445

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/48 (50%), Positives = 34/48 (70%)
 Frame = +1

Query: 307 DNQVPFQRVSVAGIHITGVPIEELIRSATLLVEALGLRRYYMEAAQQS 450
           D+   F RVS++G + +GVP+EEL ++A LLVEAL +R  YM  + QS
Sbjct: 157 DSMPYFHRVSISGGNTSGVPVEELKQAAKLLVEALFIRFKYMSLSLQS 204


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/86 (32%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = -2

Query: 433 PCSSDASP---TLRPAEW-LNVSTPLWAPQ*YVYRRRRLSGTGPGCRHGAACCRRDLEHV 266
           PC     P   TLRP  + L        P+ Y  R RR   T   CR+    CR  L   
Sbjct: 71  PCRYTLRPRYCTLRPCRYTLRTCRYTLRPRHYTLRPRRY--TLRPCRYTLRPCRYTLRPC 128

Query: 265 CASLRPHYRSLRSEISTIFYIPYVFR 188
             +LRP Y +LR    T+    Y  R
Sbjct: 129 RYTLRPRYCTLRPCRYTLRTCRYTLR 154



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
 Frame = -2

Query: 433 PCSSDASP---TLRPAEW-LNVSTPLWAPQ*YVYRRRRLSGTGPGCRHGAACCRRDLEHV 266
           PC     P   TLRP  + L        P+ Y  R RR   T   CR+    CR  L   
Sbjct: 127 PCRYTLRPRYCTLRPCRYTLRTCRYTLRPRHYTLRPRRY--TLRPCRYTLRPCRYTLRPR 184

Query: 265 CASLRPHYRSLR 230
           C +LRP    LR
Sbjct: 185 CYTLRPCRYMLR 196


>SB_22867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 280 PGDSTRRRADNQVPFQRVSVAGIHITGVPIEELIRSATLLVEAL 411
           P D TR + +N+V      V  +HIT  P E++ RS   LV+ +
Sbjct: 150 PSDHTRNQNNNRVSNSSEGVVTLHITYEP-EDVFRSCKKLVKTV 192


>SB_17212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 635 VTLLCRCWNSSEEHVVSCRYCSAAILSKLSKARVKSIDSLCLSSIRRGEPC 483
           +T +CR  NSS E   SCR    + L +      K+I S CL+++   + C
Sbjct: 146 LTRICR--NSSSEICPSCRALDTSSLIEFFLLSAKTIVSSCLATLLPSDHC 194


>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
          Length = 2282

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 175  TFRMFGTHKEYKKWSRSRSEANDNAVAATRTHVRGPGDSTRRRADNQVPFQRVSVAG 345
            TF      K   ++SRS S    N +++T +    PG S RR     V  ++VS  G
Sbjct: 2057 TFSTAHVKKRVTQYSRSMSGFLQNTMSSTASIQASPGHSPRRADKKHVIAKKVSPIG 2113


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 312 PGPVPESLRRRYTYHWGAHRGVDTFS 389
           P  V E + R Y Y W  +RGVD  S
Sbjct: 53  PKDVAERITRHYAYMWERNRGVDESS 78


>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
          Length = 2748

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
 Frame = +1

Query: 328  RVSVAGIHITGVPIEELIRSAT-LLVEALGLRRYYMEAAQQSFPETLVEFFSGHGSPRRM 504
            R   AG  +   P E  +   + LL++  G+R   + + Q    ET V   SGH +    
Sbjct: 2194 RADAAGHVLLCAPTERALDVVSELLLQVPGIRAVRIYSKQA---ETTVIDGSGHSNLALH 2250

Query: 505  LDKHKESMDFTRALLNLDSMAAEQYLQLTTCSSEEFQQR 621
            +     S   ++ALL+ ++  +    +LT+C+    Q+R
Sbjct: 2251 MRVRHASNPHSKALLSCEAEISRLTQELTSCTDPTKQER 2289


>SB_16524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 611 NSSEEHVVSCRYCSAAILSKLSKARVKSIDSLCLSSIRRGEPCP 480
           NSS E   SCR    + L +      K+I S CL+++ R  P P
Sbjct: 45  NSSSEICPSCRALETSSLIEFFLLSAKTIVSSCLATLLRLSPRP 88


>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
 Frame = -1

Query: 611 NSSEEHVVSCRYCSAAILSKLSKARVKSIDSLCLSS--IRRGEPCPEKNSTSVSGKDCWA 438
           NSS E   SCR    + L +      K+I S CL++  +R  E  P    T+ +     A
Sbjct: 42  NSSSEICPSCRVLETSSLIEFFLLSAKTIVSSCLATLLVRPLETIPAPAPTTPTSPATPA 101

Query: 437 ASM**RRKPNASTSRVAERINSSMGTPVICIP-ATETLWNGTWLSARRRVLSPG 279
           +       P  +   + E  N ++ +    IP AT+T W    +   R + S G
Sbjct: 102 SG-----PPIRTPIPLKETPNPALESAPAAIPDATDTAWERNAIGHERDLPSEG 150


>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
          Length = 517

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +2

Query: 131 PNLYIVKPKIITYLIHSGCSEHIRN--IKNGRDLAPKRTIMRSQRRAHM 271
           P+  +VK  I    + S  +E +R   +KN  D  PK T++R + + H+
Sbjct: 358 PDFKLVKSHIGLAFVLSSHAERVREEVVKNLIDFGPKVTLLRQKLKQHI 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,103,582
Number of Sequences: 59808
Number of extensions: 460101
Number of successful extensions: 1537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)