Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f18
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 248 ALSFASERDLDHFLYSLCVPNILNVL 171
           +LSF  +R++ +F++   +P+IL V+
Sbjct: 232 SLSFKLQRNIGYFVFQTYLPSILIVM 257


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = +2

Query: 509 TSTRNLWTLLAL-----YLIWTVWQPSSIYS*QRAPP 604
           TS ++ W  L+L     Y  + +W P  I + +R PP
Sbjct: 125 TSDQHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRVPP 161


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
 Frame = +2

Query: 509 TSTRNLWTLLAL-----YLIWTVWQPSSIYS*QRAPP 604
           TS ++ W  L+L     Y  + +W P  I + +R PP
Sbjct: 125 TSDQHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRVPP 161


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 561 YGSRAVSTADNVLLRRVPATTQQCNS*SAP 650
           Y SR+   +DN+  +  P+ T+Q  S   P
Sbjct: 327 YASRSDMHSDNIEKKYPPSETEQSTSMDLP 356


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 561 YGSRAVSTADNVLLRRVPATTQQCNS*SAP 650
           Y SR+   +DN+  +  P+ T+Q  S   P
Sbjct: 327 YASRSDMHSDNIEKKYPPSETEQSTSMDLP 356


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = -1

Query: 389 AERINSSMGTPVICIPATETLWNGTWLSARRRVLSPGPRTCVRVAATALSFAS 231
           A R  S  G+     PAT T    T           GP T   V AT+ + A+
Sbjct: 201 AARDESKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAA 253


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,473
Number of Sequences: 438
Number of extensions: 4476
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)