Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f18
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g28160.1 68414.m03456 ethylene-responsive element-binding fam...    29   3.6  
At5g45140.1 68418.m05542 DNA-directed RNA polymerase, putative s...    28   4.8  
At2g32910.1 68415.m04035 expressed protein                             28   4.8  
At1g72030.1 68414.m08326 GCN5-related N-acetyltransferase (GNAT)...    28   4.8  
At1g17340.1 68414.m02113 phosphoinositide phosphatase family pro...    28   4.8  
At1g15670.1 68414.m01881 kelch repeat-containing F-box family pr...    28   4.8  
At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /...    28   6.3  
At5g11890.1 68418.m01391 expressed protein                             27   8.3  
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   8.3  
At1g70880.1 68414.m08177 Bet v I allergen family protein similar...    27   8.3  

>At1g28160.1 68414.m03456 ethylene-responsive element-binding family
           protein contains similarity to ethylene-responsive
           element binding factor GI:8809573 from (Nicotiana
           sylvestris)
          Length = 245

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 249 GRSDAHTCSRSRRQHAAPCRQPGPVPE 329
           G  +A +CSRS++ H    +QP P P+
Sbjct: 5   GNLNAGSCSRSKKSHRQKQQQPQPQPQ 31


>At5g45140.1 68418.m05542 DNA-directed RNA polymerase, putative
           similar to SP|P22276 DNA-directed RNA polymerase III 130
           kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit
           2) {Saccharomyces cerevisiae}; contains Pfam profiles
           PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA
           polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2
           domain 3, PF04566: RNA polymerase Rpb2 domain 4,
           PF04567: RNA polymerase Rpb2 domain 5
          Length = 1150

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 555 GQYGSRAVSTADNVLLRRVPATTQQC 632
           G +G++A S  DNV++ R+P   + C
Sbjct: 127 GSHGNKAKSAKDNVIIGRMPIMLRSC 152


>At2g32910.1 68415.m04035 expressed protein 
          Length = 691

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +1

Query: 121 LISTKFIYRKTKNYNVSNTFRMFGTHKEYKKWSRSRSEANDNAVAATRTHVRGPGDSTRR 300
           L  ++F     +NYN  N F+   THK+  K  +    A   A       +  P D+ R+
Sbjct: 407 LAESQFKKAIIENYNNKNKFKTELTHKQVFKLKKLFRPAAIPAQVTHTQQIPVPRDTDRK 466

Query: 301 RAD 309
           R+D
Sbjct: 467 RSD 469


>At1g72030.1 68414.m08326 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 256

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 389 AERINSSMGTPVICIPATETLWNGTWLSARRRVL 288
           A  + S+ G  V+    T+ LW  TW+  +RRVL
Sbjct: 220 ARNLYSNAGYSVV---ETDPLWTSTWIGRKRRVL 250


>At1g17340.1 68414.m02113 phosphoinositide phosphatase family
           protein contains similarity to phosphoinositide
           phosphatase SAC1 [Rattus norvegicus]
           gi|11095248|gb|AAG29810; contains Pfam domain, PF02383:
           SacI homology domain; identical to cDNA SAC domain
           protein 5 (SAC5)  GI:31415726
          Length = 785

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 415 LRRYYMEAAQQSFPETLVEFFSGHGSPR 498
           +RRYY  A Q S  +  +  F GH  PR
Sbjct: 561 VRRYYSNAYQDSDKQNAINVFLGHFRPR 588


>At1g15670.1 68414.m01881 kelch repeat-containing F-box family
           protein similar to SP|Q9ER30 Kelch-related protein 1
           (Sarcosin) {Rattus norvegicus}; contains Pfam profiles
           PF01344: Kelch motif, PF00646: F-box domain
          Length = 359

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -2

Query: 403 RPAEWLNVSTPLWAPQ*YVYRRRRLSGTGPGCRHGA-----ACCRRDL 275
           + AE  +V+T  W+PQ   +    ++   P C  G      ACCRRDL
Sbjct: 235 KTAESFDVTTWRWSPQGEEFLSSEMTMWPPICAAGENGDLYACCRRDL 282


>At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15)
           (Pectinase) {Agrobacterium tumefaciens}; contains
           PF00295: Glycosyl hydrolases family 28
          Length = 475

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 558 QYGSRAVSTADNVLLRRVPATTQQCN 635
           QYG      + N+++RR+  TT+ C+
Sbjct: 291 QYGMAVARPSSNIVIRRISGTTRTCS 316


>At5g11890.1 68418.m01391 expressed protein
          Length = 287

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 403 RPAEWLNVSTPLWAPQ*YVYRRRRLSGTGPGCRHGAACC 287
           +P  ++  + P++ PQ   Y RR    + P CR    CC
Sbjct: 46  KPQVYIPANRPVYRPQ--PYSRRHHHQSRPSCRRICCCC 82


>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = -1

Query: 644  GLRVTLLCRCWNSSEEHVVSCRYCSAAILSKLSKARV------KSIDSLCLSS 504
            G R  L+C C +S +  VVS    S  +L  + K R+         DSLC+SS
Sbjct: 2747 GHRRELVCCCVSSDQGVVVSSSESSDVLLHSIRKGRLIRRLVGVKADSLCISS 2799


>At1g70880.1 68414.m08177 Bet v I allergen family protein similar to
           Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci
           124, 136-139 (1999)] ; contains Pfam profile PF00407:
           Pathogenesis-related protein Bet v I family
          Length = 159

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 561 TVQIK*SASKVHRFLVLVEHSPRGAVPGEELHQRLREGLLGGLHVV 424
           TV++K S  K H  LV   H    A P       L+EG +G +  V
Sbjct: 15  TVELKSSVEKFHDLLVGRPHHMSNATPSNIQSAELQEGEMGQVGAV 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,612,769
Number of Sequences: 28952
Number of extensions: 305763
Number of successful extensions: 894
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)