Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f17
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0181 + 7541831-7541971,7542407-7543279,7544101-7544301,754...    30   1.6  
10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728     27   8.6  
06_03_0266 + 18933638-18933961,18934179-18934541                       27   8.6  

>02_02_0181 +
           7541831-7541971,7542407-7543279,7544101-7544301,
           7544358-7544595,7545732-7545922
          Length = 547

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +1

Query: 1   TFLKSNCNS-LPDALI--EEGINFHLCPPYSPHFGGLW 105
           T   S+CN+ + + L+  EEG+NFH  PP   H  G+W
Sbjct: 71  TTTTSDCNTDMSEDLVKREEGMNFHCDPPLHEH-TGIW 107


>10_08_0490 + 18279370-18279732,18280776-18280834,18281642-18282728
          Length = 502

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 332 QSLYSAAGIAVRGWPMRKCPGVSGIMSSGSLDSGVSGREFN 210
           Q +   AG    G  M    G  G+M  GS++SG+ GR+ +
Sbjct: 422 QGMPEGAGEPQGGGGMVFLQGGFGVMPDGSMNSGIPGRDLS 462


>06_03_0266 + 18933638-18933961,18934179-18934541
          Length = 228

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +1

Query: 379 QHFWARWSKEYISELQQRTKWRTNQSSLK 465
           +H +A W K Y ++  Q+  W   +SS +
Sbjct: 128 RHIYANWRKRYTNQKLQKKFWNCTKSSCR 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,133,684
Number of Sequences: 37544
Number of extensions: 357004
Number of successful extensions: 921
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)