Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f17
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   0.98 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.3  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 169 YEELITVLTQIEAILNSRPLTPLSSDPDDMMPLTPGHFL 285
           +E+ +T+    E I+N + LT + ++  + +   PGH L
Sbjct: 33  FEDRVTMYVY-EEIINGKKLTEIINETHENVKYLPGHKL 70


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 28  LPDALIEEGINFHLCPPYSPHFGGLWE 108
           +PD + EEG ++   PP    F  LW+
Sbjct: 49  MPDYIFEEGDDYVTLPP--EFFDSLWQ 73


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 558 SVGPWIDXYYAAQSPFKWRE 499
           ++GP+I    AA +PFK  E
Sbjct: 759 NIGPYIQKMIAAAAPFKGME 778


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 223 PLTPLSSDPDDMMPLTPGHF 282
           P +PL   PD    + PG+F
Sbjct: 44  PQSPLDMKPDTASLINPGNF 63


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 223 PLTPLSSDPDDMMPLTPGHF 282
           P +PL   PD    + PG+F
Sbjct: 44  PQSPLDMKPDTASLINPGNF 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,804
Number of Sequences: 438
Number of extensions: 3640
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)