BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmte10f15 (501 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar... 129 2e-31 SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 27 1.6 SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 3.7 SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 4.8 SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 25 6.4 SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 25 8.4 >SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosaccharomyces pombe|chr 1|||Manual Length = 905 Score = 129 bits (312), Expect = 2e-31 Identities = 63/137 (45%), Positives = 94/137 (68%), Gaps = 1/137 (0%) Frame = +2 Query: 92 KDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQEATD 271 K +DD + + N+++ V Q+ R FN + + PRK +L+KI YL+ GE+F ++AT+ Sbjct: 5 KKDDDGDESIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATE 64 Query: 272 AFFATTKLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLTKD-MTGKEDLYRAAAIRA 448 FF TKLFQ K+ LR+ VY+ IKELS +A+DVI++TSS+ KD TG+E +YR AIR+ Sbjct: 65 LFFGITKLFQHKDPSLRQFVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIRS 124 Query: 449 LCSITDASMLQAIERYM 499 L + DA+ + AIER + Sbjct: 125 LIRVIDANTVPAIERIL 141 >SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual Length = 599 Score = 27.1 bits (57), Expect = 1.6 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = -3 Query: 157 FLKYYSFIEILVWVTAVIIFILNISL 80 FLK + FI ++ +T +++ +L ISL Sbjct: 284 FLKTFDFIGLVCVITGIVLILLGISL 309 >SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 25.8 bits (54), Expect = 3.7 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -3 Query: 220 YFRKY**TFSRDNERLIKLSCFLKYYSFIEILVWVTAVIIFILNISL 80 YF Y TF + L + +Y++ I W+T ++F++ I+L Sbjct: 169 YFMNYFVTFPLE---LTTCAITFRYWTDINSCAWITIFLVFVICINL 212 >SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 589 Score = 25.4 bits (53), Expect = 4.8 Identities = 8/31 (25%), Positives = 19/31 (61%) Frame = -3 Query: 172 IKLSCFLKYYSFIEILVWVTAVIIFILNISL 80 + FL+ + F+ I+ T V++F+L +++ Sbjct: 273 VSFCVFLRDFDFVGIVTITTGVVLFLLGLNI 303 >SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 25.0 bits (52), Expect = 6.4 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%) Frame = -3 Query: 358 FTQFFDAKINHTSQ-HDFFG 302 F Q FD K+ +TSQ DFFG Sbjct: 366 FVQLFDTKLFNTSQVIDFFG 385 >SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces pombe|chr 2|||Manual Length = 585 Score = 24.6 bits (51), Expect = 8.4 Identities = 8/25 (32%), Positives = 17/25 (68%) Frame = -3 Query: 154 LKYYSFIEILVWVTAVIIFILNISL 80 +KY++ + +WVT I+F+ I++ Sbjct: 187 IKYWTNLNSGIWVTVFIVFLFFINI 211 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,733,784 Number of Sequences: 5004 Number of extensions: 29607 Number of successful extensions: 94 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 93 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 198176188 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -