Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f15
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...   129   2e-31
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   1.6  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   3.7  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.8  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   6.4  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    25   8.4  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score =  129 bits (312), Expect = 2e-31
 Identities = 63/137 (45%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
 Frame = +2

Query: 92  KDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQEATD 271
           K +DD   + + N+++  V Q+ R FN + + PRK   +L+KI YL+  GE+F  ++AT+
Sbjct: 5   KKDDDGDESIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATE 64

Query: 272 AFFATTKLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLTKD-MTGKEDLYRAAAIRA 448
            FF  TKLFQ K+  LR+ VY+ IKELS +A+DVI++TSS+ KD  TG+E +YR  AIR+
Sbjct: 65  LFFGITKLFQHKDPSLRQFVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIRS 124

Query: 449 LCSITDASMLQAIERYM 499
           L  + DA+ + AIER +
Sbjct: 125 LIRVIDANTVPAIERIL 141


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 157 FLKYYSFIEILVWVTAVIIFILNISL 80
           FLK + FI ++  +T +++ +L ISL
Sbjct: 284 FLKTFDFIGLVCVITGIVLILLGISL 309


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 220 YFRKY**TFSRDNERLIKLSCFLKYYSFIEILVWVTAVIIFILNISL 80
           YF  Y  TF  +   L   +   +Y++ I    W+T  ++F++ I+L
Sbjct: 169 YFMNYFVTFPLE---LTTCAITFRYWTDINSCAWITIFLVFVICINL 212


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -3

Query: 172 IKLSCFLKYYSFIEILVWVTAVIIFILNISL 80
           +    FL+ + F+ I+   T V++F+L +++
Sbjct: 273 VSFCVFLRDFDFVGIVTITTGVVLFLLGLNI 303


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 358 FTQFFDAKINHTSQ-HDFFG 302
           F Q FD K+ +TSQ  DFFG
Sbjct: 366 FVQLFDTKLFNTSQVIDFFG 385


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 154 LKYYSFIEILVWVTAVIIFILNISL 80
           +KY++ +   +WVT  I+F+  I++
Sbjct: 187 IKYWTNLNSGIWVTVFIVFLFFINI 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,784
Number of Sequences: 5004
Number of extensions: 29607
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)