Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10f15
(501 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.) 147 4e-36
SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36) 32 0.23
SB_53234| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05) 29 1.6
SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09) 29 2.2
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 147 bits (357), Expect = 4e-36
Identities = 82/139 (58%), Positives = 98/139 (70%)
Frame = +2
Query: 83 RDVKDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQE 262
RD KDE++ SNP+QNLDK VLQE R FN+T + RKC ILTKILYL+N
Sbjct: 6 RDKKDEEEGLSNPFQNLDKGQVLQEARVFNETPINVRKCIHILTKILYLIN--------- 56
Query: 263 ATDAFFATTKLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAI 442
++MLRRMVYL IKEL+ +A+DVIIVTSSLTKDMTGKED++RA+AI
Sbjct: 57 ---------------QLMLRRMVYLAIKELANIAEDVIIVTSSLTKDMTGKEDMFRASAI 101
Query: 443 RALCSITDASMLQAIERYM 499
RALC ITD +MLQ IERY+
Sbjct: 102 RALCRITDNTMLQGIERYL 120
>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
Length = 723
Score = 32.3 bits (70), Expect = 0.23
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = +2
Query: 209 LTKILYLLNQGENFTTQEATDAFFATTKLFQSKEIMLRRMVYLCIKELS----KLAQDVI 376
L K++ ++ GE F T T F Q I +++ I + KL ++I
Sbjct: 233 LKKVIQMILNGEKFPTLLMTVIKFLMP--LQDHTIKKLLLIFWEIVPKTGADGKLLHEMI 290
Query: 377 IVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAI 487
+V + KD+ + R + +R LC + +A +L+ +
Sbjct: 291 LVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 327
>SB_53234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 55
Score = 31.1 bits (67), Expect = 0.53
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -3
Query: 424 QILFTGHVFSQR-GSHYDHILRQFTQFFDAKINHTSQ 317
Q+L GH F++ GSHY+ I+ Q +F + TSQ
Sbjct: 11 QVLNAGHFFARPVGSHYECIMGQINDYFQSGKGTTSQ 47
>SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)
Length = 392
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 379 YDHILRQFTQFFDAKINHTSQHDFFGLKQFCCRKE 275
YD I+ ++ F+ K N T QHD K +C ++E
Sbjct: 153 YDRIIL-YSTFYGRKDNKTCQHDVIPSKGYCAQQE 186
>SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)
Length = 925
Score = 29.1 bits (62), Expect = 2.2
Identities = 28/121 (23%), Positives = 45/121 (37%)
Frame = +2
Query: 110 SSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQEATDAFFATT 289
+S Y+ T L+ E + R S +L N E TT +F ++
Sbjct: 388 TSTVYRTFSMTSRLENATELRTASTVYRTFSTTS----HLDNATELLTTSTLYRSFSVSS 443
Query: 290 KLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDA 469
L +KE++ VYL S+L + +T+S A+I SI +
Sbjct: 444 HLDNAKELLDTSTVYLAPSPTSQLNNTTVFLTASTFNPTPSLTSQLNNASISLAVSIVEP 503
Query: 470 S 472
S
Sbjct: 504 S 504
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 3.8
Identities = 24/96 (25%), Positives = 44/96 (45%)
Frame = +2
Query: 110 SSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQEATDAFFATT 289
SS ++ T V+ ++ N T ++P + I + I + ++ T + + FATT
Sbjct: 821 SSAVASSISATSVVVDSTTPNTTTLVPSISASIPSSITMNSSIEQSIDTLKPSSIAFATT 880
Query: 290 KLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLT 397
LFQ+ I + Y K +S + + SSL+
Sbjct: 881 PLFQTSIIPVTTQSY--EKTVSVIKSTTFEILSSLS 914
>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1511
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 196 FSRDNERLIKLSCFLKYY-SFIEILVWVTAVIIFILNISLERAH 68
F+ +NE +K SCF Y+ + I+V V VII I+ I + H
Sbjct: 1460 FAAENENSLK-SCFRCYHHDIVIIIVVVVLVIIIIMTIFVISCH 1502
>SB_25594| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 370 ILRQFTQFFDAKINHTSQHDFFGLKQFCCRKESVR 266
ILR+ +++ K ++H K FCCR++ R
Sbjct: 500 ILREQERYYALKAAVKARHGLASQKWFCCRRQFAR 534
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,693,032
Number of Sequences: 59808
Number of extensions: 215654
Number of successful extensions: 603
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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