Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f15
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 230 LNQGENFTTQEATDAFFATTKLFQSK 307
           LN G N  T+ + D FF    L  S+
Sbjct: 550 LNSGLNKITRNSLDCFFTMNDLEPSE 575


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 230 LNQGENFTTQEATDAFFATTKLFQSK 307
           LN G N  T+ + D FF    L  S+
Sbjct: 550 LNSGLNKITRNSLDCFFTMNDLEPSE 575


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 143 IVLQETREFNQTLVIPRKCSLILTKILYLLNQG 241
           I+LQ    ++ T  I  K S I  K + L+N G
Sbjct: 565 IILQAPSLYDTTKPIDIKYSKIAKKKMMLMNMG 597


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 92  KDEDDNSSNPYQNLDKTIVLQETREF 169
           +DED   S P  NL   ++    +EF
Sbjct: 162 QDEDVICSTPIGNLSHALLKDPVKEF 187


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 92  KDEDDNSSNPYQNLDKTIVLQETREF 169
           +DED   S P  NL   ++    +EF
Sbjct: 215 QDEDIICSTPIGNLSHALLKDPVKEF 240


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 199 FINTYENTVFTESRRKFHHSGG 264
           ++ +  NT  +    K+H SGG
Sbjct: 189 YLKSENNTELSRVGTKYHRSGG 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,833
Number of Sequences: 438
Number of extensions: 1927
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)