Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f15
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative / ga...   164   3e-41
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    35   0.027
At4g28820.1 68417.m04120 zinc finger (HIT type) family protein c...    28   3.1  
At5g42090.1 68418.m05124 expressed protein                             27   7.1  
At2g04630.1 68415.m00473 DNA-directed RNA polymerase II, putativ...    27   7.1  

>At4g34450.1 68417.m04896 coatomer gamma-2 subunit, putative /
           gamma-2 coat protein, putative / gamma-2 COP, putative
           similar to SP|Q9UBF2 Coatomer gamma-2 subunit (Gamma-2
           coat protein) (Gamma-2 COP) {Homo sapiens}; contains
           Pfam profile: PF01602 Adaptin N terminal region
          Length = 886

 Score =  164 bits (398), Expect = 3e-41
 Identities = 80/139 (57%), Positives = 101/139 (72%)
 Frame = +2

Query: 83  RDVKDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQE 262
           +D   +D+   +P+  ++K  VLQE R FN   V PR+CS ++TK+LYLLNQGE+FT  E
Sbjct: 8   KDDDHDDELEYSPFMGIEKGAVLQEARVFNDPQVDPRRCSQVITKLLYLLNQGESFTKVE 67

Query: 263 ATDAFFATTKLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAI 442
           AT+ FF+ TKLFQSK+  LRRMVYL IKELS  + +VIIVTSSL KDM  K D+YRA AI
Sbjct: 68  ATEVFFSVTKLFQSKDTGLRRMVYLIIKELSPSSDEVIIVTSSLMKDMNSKIDMYRANAI 127

Query: 443 RALCSITDASMLQAIERYM 499
           R LC I D ++L  IERY+
Sbjct: 128 RVLCRIIDGTLLTQIERYL 146


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
 Frame = +2

Query: 143 IVLQETREFNQTLVIP----RKCSLILTKILYLLNQGENFTTQEATDAFFATTKLFQSKE 310
           IVL E     + L+ P    RK    + +++Y+   G      +A+  +    K+     
Sbjct: 44  IVLSEVDILKRRLLEPDIPKRKMKEYIIRLVYIEMLGH-----DASFGYIYAVKMTHDDN 98

Query: 311 IMLRRMVYLCIKELSKLAQDVII-VTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAI 487
           ++L+R  YL +        D+II + +++ KD+     L   AA+ A+C + +   + A+
Sbjct: 99  LLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLRSDNYLVVCAALNAICRLINEETIPAV 158


>At4g28820.1 68417.m04120 zinc finger (HIT type) family protein
           contains Pfam profile: PF04438 HIT zinc finger
          Length = 173

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 104 DNSSNPYQNLDKTIVLQETREFNQTLV 184
           D+SSNP Q LD+ + ++  REF   ++
Sbjct: 137 DSSSNPLQELDEAMGIEAFREFTDKIL 163


>At5g42090.1 68418.m05124 expressed protein
          Length = 439

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -3

Query: 247 IFALIQ*IQYFRKY**TFSRDNERLIKLSCFLKYYSFIEILVWVTAVIIFIL 92
           +F ++  I+  R+   T  +    L+KL+ F +YY  +   ++ T V+++ L
Sbjct: 326 LFPIVWSIKNLREAAKTDGKAAVNLVKLTLFRQYYIVVICYIYFTRVVVYAL 377


>At2g04630.1 68415.m00473 DNA-directed RNA polymerase II, putative
           similar to SP|Q24320 DNA-directed RNA polymerase II 14.4
           kDa polypeptide (EC 2.7.7.6) (RPB6) {Drosophila
           melanogaster}; contains Pfam profile PF01192: RNA
           polymerases K / 14 to 18 kDa subunit
          Length = 144

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
 Frame = +2

Query: 86  DVKDEDDNSSNPYQNLDK--TIVLQETREFNQTLVIPRKCSLILTKILYL-LNQGENFTT 256
           D+K+ DD + +P +  DK  T  +Q  R+ ++ +    +  ++ T+ L + +N       
Sbjct: 32  DIKENDDVNVDPLETEDKVETEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVEL 91

Query: 257 QEATDAFFATTKLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLTKDMTG 412
           +  TD      K  + ++I      YL      +   D +IV  S  + + G
Sbjct: 92  EGETDPLEIAMKELRQRKIPFTIRRYLPDMSYEEWGVDELIVEDSWKRQVGG 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,825,665
Number of Sequences: 28952
Number of extensions: 150088
Number of successful extensions: 392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)