Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f13
         (731 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IB94 Cluster: Ubiquitin-protein ligase 1, putative; n...    35   1.8  
UniRef50_Q016P8 Cluster: DNA topoisomerase III, putative; n=1; O...    33   7.2  

>UniRef50_Q8IB94 Cluster: Ubiquitin-protein ligase 1, putative; n=10;
            cellular organisms|Rep: Ubiquitin-protein ligase 1,
            putative - Plasmodium falciparum (isolate 3D7)
          Length = 8591

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = -2

Query: 547  QESSRLGERVADLVKHYYV*WLFVSSLPQHNHT*LSPVLINLKLIIYCIHFEILKVLRVF 368
            Q+ S L + +     HY +  L V SL +H H  +  ++ +LK I++ IH +   +  V 
Sbjct: 7497 QDISSLIQIMVMFFSHYKLKDLIVQSLKRHTHVLIKRIIYDLKKIVHSIHNKTFNIYSVD 7556

Query: 367  H 365
            H
Sbjct: 7557 H 7557


>UniRef50_Q016P8 Cluster: DNA topoisomerase III, putative; n=1;
           Ostreococcus tauri|Rep: DNA topoisomerase III, putative
           - Ostreococcus tauri
          Length = 387

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = -2

Query: 184 VKNILYINV-SSPAPRTTPAAIGTQLFPSLSLIITSEVILLNNLFASCA 41
           V+N  + +V SS A R TP ++  +   + ++II    +LLN +FA CA
Sbjct: 330 VQNARFSSVDSSLASRATPISLSQRARDATNIIIRRHDVLLNGMFARCA 378


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 685,131,973
Number of Sequences: 1657284
Number of extensions: 13535253
Number of successful extensions: 32539
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 31526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32536
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)