Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f13
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    25   8.4  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    25   8.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    25   8.4  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 9   QHYSFTKTSKKAHDANKLLSKI 74
           Q+Y+F   S+K H  N L SK+
Sbjct: 258 QYYAFVDESQKVHCLNTLFSKL 279


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 287 MYLTRSGASFLASALKRDSYLLVGVLLFLR 198
           MY      S     LKR+S+LL  VLL+LR
Sbjct: 377 MYNPTERRSESVELLKRESFLLKKVLLYLR 406


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 9   QHYSFTKTSKKAHDANKLLSKITSDVIMS 95
           QH  FTK SK ++D   +L    S  +++
Sbjct: 881 QHRDFTKESKDSNDTESILKNSYSSYVLA 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,678
Number of Sequences: 5004
Number of extensions: 59299
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)