Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f13
         (731 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 28   6.8  

>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2641

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -1

Query: 284  YLTRSGASFLASALKRDSYLLVGVLLFLRFSAAGEEHLIYQC*QSSSQDNACCDRHPVIS 105
            Y    G     S  K+ ++L +G  L +RF++      +++  Q+ + D    D  PV+S
Sbjct: 2242 YADVKGQVLKLSDFKQKTFLPIGKSLHIRFTSPTNSSAMFKAVQADTDDGLTLDDKPVLS 2301

Query: 104  I 102
            +
Sbjct: 2302 V 2302


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 653 WQPLPNIQLPNFLYINPINASTKVEPPRTRSQLESSGKL 537
           W P     L NF+  NP+N  T +   RT S L SS +L
Sbjct: 698 WNPFDTDTLGNFIKWNPVNTDTPL--IRTPSGLSSSVRL 734


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,280,959
Number of Sequences: 59808
Number of extensions: 426614
Number of successful extensions: 1039
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)