Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f13
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          25   0.73 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.8  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   9.0  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   9.0  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   9.0  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   9.0  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 365 F*NNVSFDIFE*DFQPSIEEVLT 297
           F  NVSFDI + DF PS    +T
Sbjct: 12  FEENVSFDIDDPDFAPSKNTTIT 34



 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +2

Query: 437 WTKLCVIVLRK 469
           W+K+C++V RK
Sbjct: 53  WSKVCIVVRRK 63


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 247  ALARKEAPLRVKYIKQNVNTSSIDG*KSHSKMSKLTL 357
            ++  K +PL     K+N+NT ++DG  S  K    TL
Sbjct: 1211 SIESKSSPL---VYKRNINTYTLDGVGSVEKTGVSTL 1244


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 632 QLPNFLYINPINASTKVEPP 573
           Q+P F YI P  +  +  PP
Sbjct: 371 QIPRFRYIGPPTSFPRFIPP 390


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 632 QLPNFLYINPINASTKVEPP 573
           Q+P F YI P  +  +  PP
Sbjct: 371 QIPRFRYIGPPTSFPRFIPP 390


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 632 QLPNFLYINPINASTKVEPP 573
           Q+P F YI P  +  +  PP
Sbjct: 371 QIPRFRYIGPPTSFPRFIPP 390


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 632 QLPNFLYINPINASTKVEPP 573
           Q+P F YI P  +  +  PP
Sbjct: 360 QIPRFRYIGPPTSFPRFIPP 379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,371
Number of Sequences: 438
Number of extensions: 3958
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)