Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10f12
(288 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471 104 1e-23
11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528 102 4e-23
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 100 2e-22
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123... 27 3.2
08_02_1440 - 27113396-27113418,27113976-27114102 25 7.4
07_03_1600 - 28024495-28024509,28024681-28024731,28025083-280253... 25 7.4
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424... 25 7.4
07_01_0578 + 4295386-4296489,4297394-4297507 25 9.8
05_05_0149 - 22733703-22736216 25 9.8
>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
Length = 69
Score = 104 bits (249), Expect = 1e-23
Identities = 47/69 (68%), Positives = 60/69 (86%)
Frame = +2
Query: 50 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 229
MP++I +IKDFL+ ARRKDA+SV+IK++ + VKFKVRCSR+LYTL + D +KA KLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVRIKRSKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSL 60
Query: 230 PPGLQVKEV 256
PPGL V+EV
Sbjct: 61 PPGLTVQEV 69
>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
Length = 69
Score = 102 bits (245), Expect = 4e-23
Identities = 46/69 (66%), Positives = 59/69 (85%)
Frame = +2
Query: 50 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 229
MP++I +IKDFL+ ARRKDA+SV+IK+ + VKFKVRCS++LYTL + D +KA KLKQSL
Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSL 60
Query: 230 PPGLQVKEV 256
PPGL V+EV
Sbjct: 61 PPGLTVQEV 69
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 100 bits (240), Expect = 2e-22
Identities = 45/68 (66%), Positives = 58/68 (85%)
Frame = +2
Query: 53 PREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLP 232
P++I +IKDFL+ ARRKDA+SV+IK+ + VKFKVRCS++LYTL + D +KA KLKQSLP
Sbjct: 32 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSKYLYTLCVFDADKANKLKQSLP 91
Query: 233 PGLQVKEV 256
PGL V+EV
Sbjct: 92 PGLTVQEV 99
>05_01_0178 -
1235546-1235756,1235869-1235945,1236194-1236347,
1237067-1237216,1237363-1237484,1237806-1237910,
1237986-1238213
Length = 348
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = +2
Query: 50 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 211
MP + + L+ + + +V ++ N + +V C ++L+ +I++K AE
Sbjct: 170 MPPDGISVHPILVDTKTRYKPTVPLEAQKRNGRLQVMCYKYLWDNLISEKFPAE 223
>08_02_1440 - 27113396-27113418,27113976-27114102
Length = 49
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 200 EKAEKLKQSLPPGLQ 244
E A KLKQ LPPG Q
Sbjct: 25 ENANKLKQFLPPGSQ 39
>07_03_1600 -
28024495-28024509,28024681-28024731,28025083-28025355,
28025427-28025554,28025645-28025764,28025856-28025933,
28025993-28026061,28026183-28026213
Length = 254
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 183 WSSLTKRRLRNLSRVYLQVSKLK 251
WS LTK+ N+SRV + ++ K
Sbjct: 77 WSKLTKKVASNVSRVVVSLASFK 99
>06_01_0590 -
4240260-4240883,4241063-4242238,4242691-4242760,
4243739-4243803
Length = 644
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 71 IKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVIT 193
++ +I+A + V I P VK C++F Y +V+T
Sbjct: 55 LQRLIIEASQNGTDEVYIHDIPGGVKIFEICAKFCYGMVVT 95
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 86 IKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAE 211
IKAR++ S + K +PE + Y +I+D + AE
Sbjct: 352 IKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSDYAE 393
>05_05_0149 - 22733703-22736216
Length = 837
Score = 25.0 bits (52), Expect = 9.8
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 71 IKDFLIKARRKDAKSVKIKKN---PENVKFKVRCSRFLYTLVITDKEKAE 211
+KD I + R+ S++ K N PENV S+ T V DKE AE
Sbjct: 534 MKDEEIHSLRRMLSSLQRKMNAPAPENVDKSEETSKISTTPVTEDKEIAE 583
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,652,451
Number of Sequences: 37544
Number of extensions: 104928
Number of successful extensions: 261
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -