Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10f12
(288 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical pr... 124 8e-30
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 29 0.40
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical... 27 2.9
AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical ... 27 2.9
U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusi... 26 5.0
U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusi... 26 5.0
U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone... 25 6.6
AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear recep... 25 6.6
AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear recep... 25 6.6
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 25 8.7
AF025471-10|AAB71059.1| 326|Caenorhabditis elegans Hypothetical... 25 8.7
>Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical
protein C06B8.8 protein.
Length = 70
Score = 124 bits (300), Expect = 8e-30
Identities = 56/70 (80%), Positives = 65/70 (92%)
Frame = +2
Query: 50 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 229
MP+EIK+IKDFL+KARRKDAKSVKIKKN N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60
Query: 230 PPGLQVKEVK 259
PPG+QVKE+K
Sbjct: 61 PPGIQVKELK 70
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 29.5 bits (63), Expect = 0.40
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 99 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 215
G+ NR++ T+ S+S+ A S P+SS+T R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232
>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
protein Y75B8A.26 protein.
Length = 1144
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 80 FLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 190
F K+R+ + K K++KN ENV+ R + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559
>AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical
protein F52C6.11 protein.
Length = 304
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 41 VFNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRCSRFLYTL 184
+++MP IK ++FL+ + K K +K+ K + K C + TL
Sbjct: 226 LYDMPFPIKRCEEFLVDSSEKSTKEKLKVAKKYQLENLKASCLAKINTL 274
>U23529-12|AAL13323.1| 561|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform b protein.
Length = 561
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 176 YTLVITDKEKAEKLKQSLPPGLQVKEVK 259
+T V+ K EKL + P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462
>U23529-11|AAK39165.1| 519|Caenorhabditis elegans Cation diffusion
facilitator familyprotein 1, isoform a protein.
Length = 519
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 176 YTLVITDKEKAEKLKQSLPPGLQVKEVK 259
+T V+ K EKL + P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420
>U53153-8|AAC69040.1| 428|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 44 protein.
Length = 428
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 44 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 151
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187
>AY305833-1|AAR11978.1| 428|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 428
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 44 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 151
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 153 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187
>AF273785-1|AAG15134.1| 423|Caenorhabditis elegans nuclear receptor
NHR-44 protein.
Length = 423
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 44 FNMPREIKDIKDFLIKARRKDAKSVKIKKNPENVKF 151
F++ IKD D+++K K KSVK+K + E + F
Sbjct: 148 FDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 176 YTLVITDKEKAEKLKQSLPP 235
Y + IT K AEKL + +PP
Sbjct: 299 YVMTITGKGPAEKLMKEVPP 318
>AF025471-10|AAB71059.1| 326|Caenorhabditis elegans Hypothetical
protein R52.1 protein.
Length = 326
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 44 FNMPREIKDIKDFLIKARRKDAK-SVKIKKNPENVKFKVRC 163
F MP I+ ++FLI+ K K +K+ K + K C
Sbjct: 225 FTMPLPIQKCEEFLIEKSEKSVKEKLKLVKKYQLKSLKTHC 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,891,543
Number of Sequences: 27780
Number of extensions: 99320
Number of successful extensions: 350
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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