Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f08
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)                   235   2e-62
SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)                    95   6e-20
SB_37033| Best HMM Match : Annexin (HMM E-Value=0)                     31   0.62 
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)                28   7.7  

>SB_43857| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
          Length = 119

 Score =  235 bits (575), Expect = 2e-62
 Identities = 106/116 (91%), Positives = 114/116 (98%)
 Frame = +3

Query: 66  MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 245
           MK++YKEEH FEKR+AEGEKIR+KYPDRVPVIVEKAPKAR+GDLDKKKYLVPSDLTVGQF
Sbjct: 1   MKWEYKEEHPFEKRRAEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQF 60

Query: 246 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYG 413
           YFLIRKRIHLRPEDALFFFVNNVIPPTSATMG LYQEHH+EDFFLYIA+SDE+VYG
Sbjct: 61  YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116


>SB_13547| Best HMM Match : MAP1_LC3 (HMM E-Value=0)
          Length = 140

 Score = 94.7 bits (225), Expect = 6e-20
 Identities = 48/115 (41%), Positives = 71/115 (61%), Gaps = 2/115 (1%)
 Frame = +3

Query: 78  YKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKAR-LGDLDKKKYLVPSDLTVGQFYFL 254
           +K+  SF  R+ E   IR K+P ++PVIVE+  K + L  LDK K+LVP +LT+ QF  +
Sbjct: 14  FKQRKSFVSRRDEVAGIRAKFPSKIPVIVERYHKEKDLPLLDKTKFLVPQELTMSQFVTI 73

Query: 255 IRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN 416
           IR R+ L    A +  VNN  +   S TM  LY+E  DED FLY+ ++ + ++G+
Sbjct: 74  IRNRMSLSSTQAFYLIVNNKSLASMSMTMAELYREEKDEDGFLYMVYASQEMFGS 128


>SB_37033| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 287

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 653 IFYYSXDDTQPKQRCENKAILYLL 582
           IF+Y+ D    K  C+NKA++YLL
Sbjct: 88  IFFYTLDIASNKPGCDNKALMYLL 111


>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 407 DIFVGKC-YV*KEIFIMVFLVERPHCCRCGWNDIVHEEEKCVFRPQVNTFPDQE 249
           D+ VG C Y      +   L +RP       +++V ++++ VF+P  +T  DQ+
Sbjct: 132 DLAVGYCQYDHLASVLTQLLTDRPEASTEILDELVRDKKRAVFKPNFDTIQDQQ 185


>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 446 NYLKVNNLELISIDIFVGKCYV*KEIFIMVFLVERPHCCRCGWNDIVHEEEK 291
           N L+ NN +L +  +F G C+V K + IM FLV    C R   +  + +++K
Sbjct: 586 NCLEYNNTQL-AYTVF-GLCFVCKLVVIMGFLVSYLSCRRINKSTRLRQDDK 635


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 147 RVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLR 278
           RV   + +     + + D K YL P D   G+FY L   +IH+R
Sbjct: 214 RVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYIL--PKIHIR 255


>SB_40533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 144 DRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRP 281
           +RV   + +     + + D K YL P D   G+FY L +   H  P
Sbjct: 81  ERVTTYINRMHTDGIINQDTKSYLTPKDSKPGRFYILPKIHKHGNP 126


>SB_42248| Best HMM Match : Keratin_B2 (HMM E-Value=4.4)
          Length = 736

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = +2

Query: 329 CNNGVSLPRTP**RFLSIHSIFRRKCLWKLIPNYSLSNS----FTLSDHMVKFNLSLRLK 496
           C N  SLP  P  +   + ++ +++C      +Y L  +    F+ SD  +   L L   
Sbjct: 383 CGNRGSLPPPPPGQLAKLLAVRQKQCEKYPTSHYMLKVAHLQYFSYSDSKINSKLKLNYV 442

Query: 497 LCIILWYFFIINWHIILYLS 556
           LC+  W     + H++  +S
Sbjct: 443 LCLNTWLSDQFDKHMVYIVS 462


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,029,932
Number of Sequences: 59808
Number of extensions: 357599
Number of successful extensions: 843
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)