Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f07
         (619 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         25   0.38 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   8.3  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 212 PQLKGDPNYIEISPTWDTDIKPELRAAVLQD-MQVYP 319
           P++ G P + E++  W+  ++  L    ++D +Q YP
Sbjct: 9   PEMMGKPIHEEVAQVWEQTLQKGLDTEEIKDLLQKYP 45



 Score = 21.0 bits (42), Expect = 8.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +3

Query: 393 NLIIGMMPSKASERRNAASSSQRTKSYWTALKR*PSQPTHYRTCTSWTWPP 545
           NL    +P + S+ R   + S+  +   T  +    +  +YR  TS T PP
Sbjct: 193 NLNSKSLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRPRTSRTEPP 243


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 94  NISKNAFAYF*FLKKLHIE 150
           N+  N+F +   LKK+H++
Sbjct: 56  NVPDNSFHFLRSLKKVHLQ 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,835
Number of Sequences: 336
Number of extensions: 3035
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)