Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f07
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.71 
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.0  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    26   5.0  
SPAC3H8.03 |||mitochondrial ribosomal protein subunit Img2|Schiz...    25   8.8  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   8.8  

>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 244 FNVIGISFKLWNFGFSLCYSTIFSRFPIEK 155
           +N +G SF L    FSL  ST+  +FP+ K
Sbjct: 89  YNWVGTSFYLGFMVFSLPLSTLLQKFPLSK 118


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 250 RYFNVIGISFKLWNFGFSLCYSTI 179
           RY ++IGI+ K+++  F LC  +I
Sbjct: 198 RYLSLIGIAEKMFDNSFRLCLKSI 221


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = -2

Query: 201 SVCVTLLYFLGFPLKNDFNVQFFKKLKVSKRIFAY 97
           + C+TL++F+G+ + +  ++    KL ++  +  Y
Sbjct: 520 AACITLVFFIGYKIYDRSHIPSLDKLDITTGLKTY 554


>SPAC3H8.03 |||mitochondrial ribosomal protein subunit
           Img2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 222 KEIPITLKYLQRGTQISSL 278
           K +P+ L Y QRGT+I +L
Sbjct: 33  KNLPVYLDYKQRGTKILTL 51


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 449 TGCVPSL*SLGWHHPN 402
           TGC  SL S  WH PN
Sbjct: 140 TGCGSSLKSASWHIPN 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,618
Number of Sequences: 5004
Number of extensions: 50144
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)