Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f07
         (619 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17339| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   4e-19
SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)               28   5.3  
SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_39600| Best HMM Match : Sushi (HMM E-Value=0)                       27   9.2  

>SB_17339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 2/103 (1%)
 Frame = +2

Query: 278 ELRAAVLQDMQVYPGFVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFRETERSQFKP 457
           +L+  V  +++V   F++            PYLKR +Y++DHWD AI G+RETE+SQ+  
Sbjct: 58  KLQDLVSGNLEVCEDFISAEEENLLLKEIEPYLKRQKYQYDHWDGAIHGYRETEKSQWPV 117

Query: 458 ENQVILDRVKALAFT--TDTLPHVHVLDLAAAGFIKPHIDAVR 580
           E   I  R+K  AF+  T  LP VH LDLA  G+IKPHID+V+
Sbjct: 118 EILRIFKRMKDTAFSPGTKLLPRVHGLDLAPNGYIKPHIDSVK 160


>SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -2

Query: 558 FMNPAAARS--KTCTCGSVSV-VKANALTRSSMTWFSGLNWLRSVSL 427
           F+ P  AR    +  CG + + V+A   +  S TW +GLN ++S SL
Sbjct: 338 FVGPQRARMARNSLPCGPIRLSVRAKRQSSQSETWTAGLNIVKSSSL 384


>SB_8660| Best HMM Match : Carboxyl_trans (HMM E-Value=0)
          Length = 1311

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 256  RWRYF-NVIGISFKLWNFGFSLCYSTIFSRFPIE 158
            +WR   NV   SF +W F FS+ Y +   R P++
Sbjct: 1060 KWRMTANVCQASFDVWLFEFSIVYCSSSRRLPLK 1093


>SB_19621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 549 PAAARSKTCTCGSVSVVKANAL 484
           PA+A+S  CTCG   + +A A+
Sbjct: 632 PASAKSYPCTCGCEDLTRAKAI 653


>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1368

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 116 LTFSFLKNCTLKSFFNGKPRKYSRVTQTEPKIPQ 217
           +T + ++ CT K  + G P    R+    P IPQ
Sbjct: 345 MTGNPVRRCTAKKIWEGMPTSCHRICSAPPYIPQ 378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,520,773
Number of Sequences: 59808
Number of extensions: 355545
Number of successful extensions: 801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)