Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10f07
(619 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC004393-1|AAH04393.1| 221|Homo sapiens alkB, alkylation repair... 111 1e-24
AY427650-1|AAR24624.1| 221|Homo sapiens spermatogenesis cell pr... 111 1e-24
AY358858-1|AAQ89217.1| 221|Homo sapiens AGTG6002 protein. 111 1e-24
AK223336-1|BAD97056.1| 221|Homo sapiens spermatogenesis associa... 109 1e-23
X53002-1|CAA37188.1| 799|Homo sapiens protein ( Human mRNA for ... 31 4.3
M35011-1|AAA52707.1| 796|Homo sapiens ITGB5 protein. 31 4.3
J05633-1|AAA59183.1| 799|Homo sapiens ITGB5 protein. 31 4.3
BC006541-1|AAH06541.1| 799|Homo sapiens integrin, beta 5 protein. 31 4.3
>BC004393-1|AAH04393.1| 221|Homo sapiens alkB, alkylation repair
homolog 7 (E. coli) protein.
Length = 221
Score = 111 bits (268), Expect = 1e-24
Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +2
Query: 251 PTWDTDIKPELRAAVLQDMQVYPGFVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFR 430
P+W P + + + V PGF++ P L+R RYE+DHWD AI GFR
Sbjct: 15 PSWVRGSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFR 74
Query: 431 ETERSQFKPENQVILDRVKALAF--TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAG 604
ETE+S++ ++ IL RV+A AF L VHVLDL A G+IKPH+D+++FCG IAG
Sbjct: 75 ETEKSRWSEASRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAG 134
Query: 605 VCLCS 619
+ L S
Sbjct: 135 LSLLS 139
>AY427650-1|AAR24624.1| 221|Homo sapiens spermatogenesis cell
proliferation related protein protein.
Length = 221
Score = 111 bits (268), Expect = 1e-24
Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +2
Query: 251 PTWDTDIKPELRAAVLQDMQVYPGFVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFR 430
P+W P + + + V PGF++ P L+R RYE+DHWD AI GFR
Sbjct: 15 PSWVRGSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFR 74
Query: 431 ETERSQFKPENQVILDRVKALAF--TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAG 604
ETE+S++ ++ IL RV+A AF L VHVLDL A G+IKPH+D+++FCG IAG
Sbjct: 75 ETEKSRWSEASRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAG 134
Query: 605 VCLCS 619
+ L S
Sbjct: 135 LSLLS 139
>AY358858-1|AAQ89217.1| 221|Homo sapiens AGTG6002 protein.
Length = 221
Score = 111 bits (268), Expect = 1e-24
Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Frame = +2
Query: 251 PTWDTDIKPELRAAVLQDMQVYPGFVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFR 430
P+W P + + + V PGF++ P L+R RYE+DHWD AI GFR
Sbjct: 15 PSWVRGSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFR 74
Query: 431 ETERSQFKPENQVILDRVKALAF--TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAG 604
ETE+S++ ++ IL RV+A AF L VHVLDL A G+IKPH+D+++FCG IAG
Sbjct: 75 ETEKSRWSEASRAILQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAG 134
Query: 605 VCLCS 619
+ L S
Sbjct: 135 LSLLS 139
>AK223336-1|BAD97056.1| 221|Homo sapiens spermatogenesis associated
11 variant protein.
Length = 221
Score = 109 bits (261), Expect = 1e-23
Identities = 54/125 (43%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Frame = +2
Query: 251 PTWDTDIKPELRAAVLQDMQVYPGFVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFR 430
P+W P + + + V PGF++ P L+R RYE+DHWD AI GFR
Sbjct: 15 PSWVRGSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYEYDHWDAAIHGFR 74
Query: 431 ETERSQFKPENQVILDRVKALAF--TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAG 604
ETE+S++ ++ I RV+A AF L VHVLDL A G+IKPH+D+++FCG IAG
Sbjct: 75 ETEKSRWSEASRAIPQRVQAAAFGPGQTLLSSVHVLDLEARGYIKPHVDSIKFCGATIAG 134
Query: 605 VCLCS 619
+ L S
Sbjct: 135 LSLLS 139
>X53002-1|CAA37188.1| 799|Homo sapiens protein ( Human mRNA for
integrin beta-5 subunit. ).
Length = 799
Score = 30.7 bits (66), Expect = 4.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 476 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 565
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
>M35011-1|AAA52707.1| 796|Homo sapiens ITGB5 protein.
Length = 796
Score = 30.7 bits (66), Expect = 4.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 476 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 565
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
>J05633-1|AAA59183.1| 799|Homo sapiens ITGB5 protein.
Length = 799
Score = 30.7 bits (66), Expect = 4.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 476 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 565
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
>BC006541-1|AAH06541.1| 799|Homo sapiens integrin, beta 5 protein.
Length = 799
Score = 30.7 bits (66), Expect = 4.3
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 476 DRVKALAFTTDTLPHVHVLDLAAAGFIKPH 565
D + L FTTD +PH+ LD G ++PH
Sbjct: 268 DALHLLVFTTDDVPHI-ALDGKLGGLVQPH 296
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,376,454
Number of Sequences: 237096
Number of extensions: 1752138
Number of successful extensions: 3339
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3334
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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