Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f07
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-12|CAE18012.1|  227|Caenorhabditis elegans Hypothetical...   101   5e-22
U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane r...    28   4.6  
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    28   4.6  
AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell...    28   4.6  
Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>AL110485-12|CAE18012.1|  227|Caenorhabditis elegans Hypothetical
           protein Y46G5A.35 protein.
          Length = 227

 Score =  101 bits (241), Expect = 5e-22
 Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
 Frame = +2

Query: 323 FVTXXXXXXXXXXXXPYLKRMRYEFDHWDDAIQGFRETERSQFKPENQVILDRVKALAF- 499
           F+T            P++KR+RYE  HWDDAI  +RE E+ +++ EN  ++ R+++ +F 
Sbjct: 38  FITEAEEKSLLVDVEPHMKRLRYEKSHWDDAIHLYREREQRKWRDENLEVISRIRSESFG 97

Query: 500 -TTDTLPHVHVLDLAAAGFIKPHIDAVRFCGDVIAGVCLCS 619
             T+ L +VH+LDL   G IKPHIDA+R+CGDVI GV L S
Sbjct: 98  ANTEHLTYVHILDLHKDGVIKPHIDAIRYCGDVITGVSLLS 138


>U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane
           receptor protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 309 CISWSTAARSSGLISVSHVGDISM*LGSPLS 217
           C+SW+ A R+S ++  S    I + LG PL+
Sbjct: 321 CVSWNKATRTSHILDDSRTRVIMLILGIPLA 351


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 309 CISWSTAARSSGLISVSHVGDISM*LGSPLS 217
           C+SW+ A R+S ++  S    I + LG PL+
Sbjct: 325 CVSWNKATRTSHILDDSRTRVIMLILGIPLA 355


>AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform a protein.
          Length = 525

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 309 CISWSTAARSSGLISVSHVGDISM*LGSPLS 217
           C+SW+ A R+S ++  S    I + LG PL+
Sbjct: 321 CVSWNKATRTSHILDDSRTRVIMLILGIPLA 351


>Z68117-4|CAA92180.1|  589|Caenorhabditis elegans Hypothetical
           protein F45E6.2 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +2

Query: 155 FFNGKPRKYSRVTQTEPKIPQLKGDPNYIEISPTWDTDIKPEL 283
           ++N   ++     ++ P + Q+  +P Y+ I+PT D   +P++
Sbjct: 203 YYNEPVQEIHMQPKSGPLVRQVSEEPRYVPIAPTVDIKAEPQV 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,301
Number of Sequences: 27780
Number of extensions: 274893
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)