Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f07
         (619 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   9.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   9.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 9/35 (25%)
 Frame = +3

Query: 495  PSQPTHYRTCT---------SWTWPPLGS*SRILT 572
            P QP H  TCT         SW  PPL + + ++T
Sbjct: 1081 PEQPPHDTTCTTLTSQTIRISWMSPPLSAANGVIT 1115


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 222 LSCGILGSVCVTLLY 178
           L CGILGS+ V   Y
Sbjct: 369 LVCGILGSILVPFFY 383


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 527 VLDLAAAGFIKPHIDAVRFCGDVIAGVCLC 616
           V DLA A  + P   A    G  I G+ LC
Sbjct: 80  VADLAVAILVMPFNVAYLLLGKWIFGIHLC 109


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 527 VLDLAAAGFIKPHIDAVRFCGDVIAGVCLC 616
           V DLA A  + P   A    G  I G+ LC
Sbjct: 80  VADLAVAILVMPFNVAYLLLGKWIFGIHLC 109


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 527 VLDLAAAGFIKPHIDAVRFCGDVIAGVCLC 616
           V DLA A  + P   A    G  I G+ LC
Sbjct: 80  VADLAVAILVMPFNVAYLLLGKWIFGIHLC 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,738
Number of Sequences: 438
Number of extensions: 3370
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)