Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte10f06
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 29 0.70
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 28 0.93
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 0.93
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 28 1.2
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 27 2.8
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 27 2.8
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 25 8.6
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 25 8.6
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 25 8.6
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 28.7 bits (61), Expect = 0.70
Identities = 18/75 (24%), Positives = 31/75 (41%)
Frame = +1
Query: 382 KLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDY 561
+L S +L ++ S S S L+ + +E + + V++ CE F + Y
Sbjct: 144 ELNFSTEELSSFDTTLLNSDTSKLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSY 203
Query: 562 LSGEFLDEQYKGQRD 606
L E KG+ D
Sbjct: 204 LKENLKSELRKGRLD 218
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 28.3 bits (60), Expect = 0.93
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 395 P*PTSSRTGPPQTRRGRAAHQPSSTPSSWRV 487
P PT+ P+ RG+A ++PS +W++
Sbjct: 337 PVPTNVVKANPRVNRGKAGYEPSENIINWKI 367
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 0.93
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 463 EHALKLESDVTNSIREVIKTCESSFNDYHLV--DYLSGEFLDEQYKGQRDL 609
E +L V N I ++KTC +S ND ++ DY+S + + K Q+DL
Sbjct: 749 ESQKELMYGVRNDIDALVKTCTTSLNDADIILSDYISDQKSKFESK-QQDL 798
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 454 SALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQY 591
S L+ K +S+ N IR +I E++ H +S FL+E Y
Sbjct: 669 SQLKKVYKPKSEAINPIRTIISNWENNSYTNHSSYQISNLFLEEDY 714
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 492 HQQHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 602
H QH H+ +E L+ PG + P + Q PT
Sbjct: 196 HHQHIQAHEMAQESLETRNPGNISSSSAPLASDQSPT 232
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 243 NPVLSHG-GLLLDRYGEPPRLREAILRC 323
+P L +G G+L DRYG EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 475 KLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQ 588
++E DV S++ + DYH LSGE LD +
Sbjct: 146 EVEKDVQGSLKSKDGFRSVTLKDYHRQKLLSGEILDAE 183
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 87 NSPHLNFSYNHRFFDDTQKNMR 22
+SP+++F+Y+ F D QK +R
Sbjct: 95 SSPNMDFTYSINSFGDYQKQLR 116
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 148 VSPVTIRDEWLTMEQTCYNMMRKQIQEEV 234
+S +++ ++ EQ Y +KQ QEE+
Sbjct: 39 LSDASVKSSYVDQEQQAYENWKKQEQEEI 67
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +1
Query: 352 KLIDYLLMRGKLTGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVI 516
+L DY+L R +L SV + + + ++ + LKLE+ + ++ R ++
Sbjct: 584 ELFDYILARRRLEDSVACRLFAQLISGVAYLHSRGVVHRDLKLENILLDTNRNIV 638
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,060
Number of Sequences: 5004
Number of extensions: 42231
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -