Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f05
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0322 - 2898272-2898475,2898548-2898730,2898817-2899702,290...    28   3.2  
02_05_0339 - 28094581-28094817,28095011-28096381,28097713-280979...    27   7.5  
11_03_0016 - 8981218-8981290,8981512-8981558,8981688-8981842,898...    26   9.9  
09_06_0330 - 22376394-22376505,22376609-22376744,22376835-223769...    26   9.9  
08_02_1633 + 28392378-28393445                                         26   9.9  
06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011     26   9.9  

>08_01_0322 -
           2898272-2898475,2898548-2898730,2898817-2899702,
           2902070-2902374
          Length = 525

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
 Frame = +2

Query: 155 CSTGLQ*MERQYGSVD-VGICCFILDFNVCDGFNRGCVLRRRLSLRNKHGYCQWSQQICK 331
           C      +E+ Y  +D +   CF + +N+    +    L+  +   N   +     ++ K
Sbjct: 351 CLLNASSVEKAYFRLDDMSFPCFHMKYNILSALSNVKNLKLLIGQFNDDAFQLMQNEVLK 410

Query: 332 LSVLRCKTF--VLKLVAINWFV 391
             + RC+TF  + KL   +W V
Sbjct: 411 RDLWRCRTFNSLKKLSVSDWCV 432


>02_05_0339 -
           28094581-28094817,28095011-28096381,28097713-28097922,
           28098047-28098283,28098677-28099041,28099661-28099970
          Length = 909

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -1

Query: 303 YPCLLRSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPY-WRSIHCSPVEQSQALW 139
           YP  +  +  R+ T P   P    K R    I  + +P  WR +H   V Q   +W
Sbjct: 710 YPDRVMRQLGRKQTIPPPPPHDESKLRQLHKINHTGKPRDWRKLHAEYVNQYNRIW 765


>11_03_0016 -
           8981218-8981290,8981512-8981558,8981688-8981842,
           8981930-8982023,8982158-8982231,8982250-8982283,
           8982689-8982807,8983586-8983673,8983901-8983963,
           8983964-8984018,8984527-8984575,8985693-8985753,
           8986288-8986638
          Length = 420

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 216 QHIPTSTEPYWRSIHCSPVEQSQALWSISLSVFRCCSYL 100
           +H+  S++ +W S H S V+++Q    I   + R C ++
Sbjct: 313 KHVHRSSDGWWGSFHGSDVKKNQLASEIIDHLLRECCWM 351


>09_06_0330 -
           22376394-22376505,22376609-22376744,22376835-22376942,
           22377056-22377152,22377490-22377594,22377699-22377884,
           22378312-22378371,22378545-22378781
          Length = 346

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
 Frame = +3

Query: 51  IYLATQNIAAMTSYTPEDMNNIETPKEKCSIELGFVQQDYNEWNANT----ALWMLVYAV 218
           IY+   NI     +T +DM  +   K K +  L  + + Y +W+ ++    AL+ L   V
Sbjct: 214 IYVVGLNITTQVYFTDKDMLELRNSKGKHAQFLCDICKFYRDWHVHSYGVDALF-LHDPV 272

Query: 219 LFWILTYVMVLTVAVCFDVGFRSVTSMGIVNGH 317
            F  L +    T    F  G   V + GI  GH
Sbjct: 273 SFTALVHPEYFT----FKKGVVRVETQGICKGH 301


>08_02_1633 + 28392378-28393445
          Length = 355

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 294 LLRSESRRRSTQPRLKPSHTLKSRIKQH-IPTSTEPYWRSIHCSPVEQSQA-LWSISLS 124
           LL    R R  + R++ SH+    ++QH  P+S+     S       QS A  WS++ S
Sbjct: 148 LLTDAERLRDARRRIRVSHSTHELVQQHGSPSSSSGSPSSASSRTSSQSHASSWSVASS 206


>06_03_0853 - 25384198-25384731,25384810-25385210,25385816-25386011
          Length = 376

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 249 KPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQS 151
           KPS+  +  +    PTS EP    ++CS  + S
Sbjct: 244 KPSNKKQKTVANSSPTSVEPADLDVYCSDAQPS 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,837,345
Number of Sequences: 37544
Number of extensions: 220895
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)