Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f05
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus s...    31   0.39 
At3g43890.1 68416.m04698 DC1 domain-containing protein contains ...    30   0.51 
At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal hydrolase-r...    29   1.2  
At1g20050.1 68414.m02510 C-8,7 sterol isomerase identical to C-8...    29   1.6  
At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa...    27   3.6  
At5g21080.1 68418.m02510 expressed protein predicted proteins - ...    27   6.3  
At5g01440.1 68418.m00057 insulin-degrading enzyme-related contai...    27   6.3  
At4g03450.1 68417.m00472 ankyrin repeat family protein contains ...    26   8.3  

>At1g67960.1 68414.m07763 expressed protein AT-AC non-consensus
           splice sites at intron 6
          Length = 624

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 11/48 (22%), Positives = 28/48 (58%)
 Frame = +3

Query: 198 WMLVYAVLFWILTYVMVLTVAVCFDVGFRSVTSMGIVNGHNRSVNYLY 341
           W +++ V+ +++TY+M+ ++ V   +G R   +  I     R+ ++L+
Sbjct: 575 WRMLWMVILFVITYIMLTSLKVLIGMGLRKHATWYINRCRRRNSSHLH 622


>At3g43890.1 68416.m04698 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
 Frame = -1

Query: 237 TLKSRIKQHIPTSTEPYWRSIHCSPV--EQSQALWSIS----LSVFRC----CSYLQEYK 88
           T ++ +     ++TEP++   H  P+     Q + SI     L V RC    C Y+ +YK
Sbjct: 471 TTQTSLDLRCASTTEPFFHKTHPHPLFYTSPQGICSICKKDHLHVLRCVEDGCEYIMDYK 530

Query: 87  MSLLLYFV 64
            +LL Y V
Sbjct: 531 CALLPYEV 538


>At5g61950.1 68418.m07776 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1132

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 288 RSESRRRSTQPRLKPSHTLKSRIK---QHIPTSTEPYWRSIHCSPVEQSQALWS 136
           + +S++R  + + KPS ++ S +    +H P ST P  R++    +E   AL S
Sbjct: 731 KPQSKKRRDRTKKKPSTSISSLLDKTVEHKPESTSPSLRTVEEDSMEPEDALAS 784


>At1g20050.1 68414.m02510 C-8,7 sterol isomerase identical to C-8,7
           sterol isomerase GI:11279073 from [Arabidopsis thaliana]
           (Plant Mol. Biol. 38 (5), 807-815 (1998))
          Length = 223

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 234 TYVMVLTVAVCFDVGFRSVTSMGIVNGHNRSVNYLYYGAKHLY*N-WW 374
           +YV+ L ++VC   G        I+ G N + N  YY + ++  N WW
Sbjct: 141 SYVLQLAISVCQLYGCLVYFITAILEGDNFATNSFYYYSYYIGANCWW 188


>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 398

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = -1

Query: 324 ICCDH*QYPCLLRSESRRRSTQPRLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQSQA 145
           I C H +   LL S        P+L      K++  + IP     Y  +  CS +     
Sbjct: 201 ITCPHYRCNSLLTSVRCGNLLTPKLNKMWEQKTK-DELIPVMDRVYCPNPRCSTLMSETE 259

Query: 144 LWSISLSVFRCC 109
           L  +++ V RCC
Sbjct: 260 LSGLNIGVRRCC 271


>At5g21080.1 68418.m02510 expressed protein predicted proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 980

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 38  FNLFNLFGYTKYSSNDIL 91
           F+L  LFG TK+SSN++L
Sbjct: 625 FSLVLLFGRTKHSSNEVL 642


>At5g01440.1 68418.m00057 insulin-degrading enzyme-related contains
           weak similarity to Swiss-Prot:P14735 insulin-degrading
           enzyme (Insulysin) (Insulinase) (Insulin protease) [Homo
           sapiens]
          Length = 307

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 269 RRRLSLRNKHGYCQWSQQICKLSVLRCKTFVLKLVAIN 382
           ++ LSL  K+   +W ++  +LS  +C +FV+ +   N
Sbjct: 159 KKELSLITKNDLIEWYKRYVRLSSPKCCSFVVSIWGCN 196


>At4g03450.1 68417.m00472 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 641

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 357 NVLHRNTDNLQICCDH*QYPCLLRSESRR 271
           N+LHR+T N+  C D   YP  +  E  R
Sbjct: 275 NLLHRSTSNVFECDDDGSYPIHMAVEKGR 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,099,420
Number of Sequences: 28952
Number of extensions: 188858
Number of successful extensions: 549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)