Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f04
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    30   0.29 
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   8.2  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   8.2  

>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 575 FGLQCAAGAPLSSMAALAEHY--VTHVRTVRPHQPYLLLGYSFG 450
           FG+ C +  P      L ++   +TH+ T    +P + L Y+FG
Sbjct: 505 FGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFG 548


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 571 PNTAPATSLATPRSRSTTP 627
           PN  PA SLA P++RS+ P
Sbjct: 161 PNLYPAKSLAIPKARSSLP 179


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 186 DIDAAKVLSLFTRFKFFLFIKTTFSFVPGKHTT 88
           D++  K+L    R K  LF++ T  ++PG+ T+
Sbjct: 685 DVELNKLLKWNQRKKSALFLRKTTKYIPGEETS 717


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 520 SASAAMEDSGAPAAHCSPNTAPATSLATPRSRSTTPSI 633
           SAS+    +  P++  + +++ ++S +TP S S T SI
Sbjct: 138 SASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSI 175


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 165 LSLFTRFKFFLFIKTTFSFVPGKHTT 88
           LSL T + F L + TT    P KH T
Sbjct: 138 LSLDTEYDFSLVLDTTAGTFPSKHIT 163


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 460 YPSSR*GWWGRTVRTCVT*CSASAAMEDSGAPAAHCSPNTAPATSLATPRSRSTTPS 630
           YP +    +G  + T  +  SASA+   +   A+  S +T+ ATS +   S S++ S
Sbjct: 485 YPEASLTSFGNFLGTATSYSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRS 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,768,198
Number of Sequences: 5004
Number of extensions: 24968
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)