Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10f03
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    28   1.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    28   1.4  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.8  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    27   1.8  
SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|...    27   2.4  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    26   4.2  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   5.5  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    26   5.5  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   7.3  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   7.3  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    25   9.7  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   9.7  

>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 156 EDSKEASLEIPTENFLNNLTACTRRENTLMHEIRTAK 266
           E     SLEIP  +FL+  T  ++RE+ L  E  ++K
Sbjct: 135 ESKFRLSLEIPPTDFLSTSTELSKRESCLSTETSSSK 171


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 378 QAIDHVLLNTTNDKNKDSCIALRVKKIEKFPTYD 479
           ++ID+  +N   DKNKDS +  R    E  PT D
Sbjct: 434 KSIDYPEMNVIKDKNKDSTV--RASNNENIPTPD 465


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
 Frame = +3

Query: 90  CYATNANKSIGDENREDIAETNEDSKEASLEIPTENFLNN-LTACTRRENTLMHEIRTAK 266
           CY  N  K + +      A   E SK+         +LNN L  C R  +   H I    
Sbjct: 117 CYTQNDLKPLKERLERIRAAIVEGSKKEDASPVVVKYLNNKLAVCDRNYSEAQHNISKIS 176

Query: 267 PSEFPFMVAIMSPQNQ 314
           P        ++S   Q
Sbjct: 177 PELIGIQTRLVSIHRQ 192


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 374 TTSSRSQNHSIRNYDTRTQKLILRRHNSHHKRKLTG 267
           +T++ ++   + N D RT K   ++H+ HHK+K  G
Sbjct: 479 STAATNEESVVSNED-RTSKKAGKKHHRHHKKKKGG 513


>SPAC23G3.04 |||DUF1711 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 177 LEIPTENFLNNLTACTRRENTLMHEIRTAKPSEFPFMV 290
           L++PTE F   L++   ++N         KP E PF +
Sbjct: 9   LKVPTERFREVLSSLKEKQNFTASPSSQPKPQERPFQM 46


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +3

Query: 375 QQAIDHVLLNTTNDKNKDSCIALRVKKIEKFPTYDGGEIHKDVALIYTEKYNNTVVSKIK 554
           Q A+D+ ++    +KN+ S   +R K IE     D  E  K    +Y ++ NN + SK +
Sbjct: 34  QSALDYFMMALKYEKNEKSKEIIRSKVIEYL---DRAEKLK----VYLQEKNNQISSKSR 86

Query: 555 LGN 563
           + N
Sbjct: 87  VSN 89


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +3

Query: 399 LNTTNDKNKDSC--IALRVKKIEKFPTYDGGEIHKDVALIYTEKYNNTVVSKIKLGNYTD 572
           +  TNDK + S   I   V + EK+   D  E  +  A  + E Y  ++ + +   N  D
Sbjct: 499 ITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKD 558

Query: 573 KKSITDFEA 599
           K   +D EA
Sbjct: 559 KVDASDKEA 567


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA
          synthetases |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 15 YKMWVKTIFAYLCVFETILLN 77
          YK+++   F+YL  FET+ LN
Sbjct: 16 YKLFITHKFSYLLRFETVTLN 36


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 348 MILTSARCSQQAIDHVLLNTTNDKNK 425
           M L    C+QQA+  ++L+T N +N+
Sbjct: 210 MFLLIFSCAQQAVTSIVLDTENLRNR 235


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 413 ISGIQ*NVIYCLLTTSSRSQNHSIRNYDTRTQKLILRRHNS 291
           I G+Q N+I CLL T       ++R   T     ++ RH S
Sbjct: 449 IEGLQTNLILCLLQTVLFDNEINVRRAATAALFEVIGRHAS 489


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 517 VYINATSL*ISPPSYVGNFSIFLTRR 440
           +YIN+T +    PS++  FS +LT R
Sbjct: 189 LYINSTRIYEDRPSHIEAFSAWLTER 214


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 162 SKEASLEIPTENFLNNLTACTRRENTLMHEIR-TAKPSE 275
           SK+    + TENF N+L   T     ++H+ R T KP++
Sbjct: 120 SKDVVHPVKTENFANDLDT-TSDSKPVVHQTRATRKPAQ 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,005
Number of Sequences: 5004
Number of extensions: 55518
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)